PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
44851-44900 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | I16_PLUS | segdup | homalt | 97.4359 | 100.0000 | 95.0000 | 94.6809 | 19 | 0 | 19 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | func_cds | * | 99.4505 | 100.0000 | 98.9071 | 34.4086 | 180 | 0 | 181 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | func_cds | het | 98.3607 | 100.0000 | 96.7742 | 40.9524 | 59 | 0 | 60 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.0966 | 96.8208 | 99.4065 | 69.4192 | 335 | 11 | 335 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.6764 | 99.6119 | 99.7409 | 78.4116 | 770 | 3 | 770 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8179 | 99.8179 | 99.8179 | 80.9639 | 548 | 1 | 548 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 82.8729 | 92.5926 | 75.0000 | 96.7742 | 25 | 2 | 3 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.6719 | 99.4905 | 99.8539 | 72.1465 | 1367 | 7 | 1367 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 93.5774 | 90.1961 | 97.2222 | 94.2308 | 46 | 5 | 35 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 96.0000 | 96.0000 | 61.5385 | 24 | 1 | 24 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 100.0000 | 66.6667 | 91.6667 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m0_e0 | het | 96.2303 | 93.8650 | 98.7179 | 87.5050 | 306 | 20 | 308 | 4 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m1_e0 | het | 94.2709 | 89.9614 | 99.0141 | 85.8566 | 699 | 78 | 703 | 7 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m2_e0 | het | 94.3221 | 90.0378 | 99.0345 | 86.8636 | 714 | 79 | 718 | 7 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m2_e1 | het | 94.3102 | 90.0000 | 99.0541 | 86.9442 | 729 | 81 | 733 | 7 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m0_e0 | het | 96.8296 | 95.3125 | 98.3957 | 90.5793 | 183 | 9 | 184 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m1_e0 | het | 93.9683 | 89.7119 | 98.6486 | 88.3311 | 436 | 50 | 438 | 6 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m2_e0 | het | 93.7725 | 89.3360 | 98.6726 | 89.3947 | 444 | 53 | 446 | 6 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m2_e1 | het | 93.8042 | 89.3701 | 98.7013 | 89.4569 | 454 | 54 | 456 | 6 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m0_e0 | het | 95.6145 | 92.4528 | 99.0000 | 93.7422 | 98 | 8 | 99 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m1_e0 | het | 95.3587 | 92.6421 | 98.2394 | 90.9091 | 277 | 22 | 279 | 5 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m2_e0 | het | 95.1641 | 92.2330 | 98.2877 | 91.7561 | 285 | 24 | 287 | 5 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m2_e1 | het | 95.1193 | 92.1136 | 98.3278 | 91.8149 | 292 | 25 | 294 | 5 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l250_m1_e0 | het | 94.0171 | 91.6667 | 96.4912 | 96.8733 | 55 | 5 | 55 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l250_m2_e0 | het | 93.7500 | 90.9091 | 96.7742 | 97.0878 | 60 | 6 | 60 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l250_m2_e1 | het | 93.7500 | 90.9091 | 96.7742 | 97.1946 | 60 | 6 | 60 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | segdup | het | 98.7941 | 98.8848 | 98.7037 | 95.3739 | 532 | 6 | 533 | 7 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.7468 | 98.3607 | 99.1361 | 82.4621 | 480 | 8 | 459 | 4 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 88.8889 | 0.0000 | 98.2759 | 8 | 1 | 0 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.3499 | 98.9224 | 99.7812 | 72.1171 | 459 | 5 | 456 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I6_15 | segdup | * | 98.5591 | 97.7143 | 99.4186 | 92.8003 | 171 | 4 | 171 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I6_15 | segdup | het | 97.5610 | 96.3855 | 98.7654 | 93.9052 | 80 | 3 | 80 | 1 | 0 | 0.0000 | |
| astatham-gatk | SNP | * | func_cds | * | 99.8621 | 99.7796 | 99.9448 | 24.2600 | 18110 | 40 | 18107 | 10 | 0 | 0.0000 | |
| astatham-gatk | SNP | * | func_cds | het | 99.7982 | 99.6864 | 99.9102 | 26.1346 | 11126 | 35 | 11123 | 10 | 0 | 0.0000 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.9667 | 98.0640 | 99.8862 | 50.8114 | 2634 | 52 | 2634 | 3 | 0 | 0.0000 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6839 | 99.4502 | 99.9188 | 54.8820 | 6150 | 34 | 6150 | 5 | 0 | 0.0000 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5662 | 99.2623 | 99.8720 | 56.6274 | 3902 | 29 | 3902 | 5 | 0 | 0.0000 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7288 | 99.5616 | 99.8965 | 59.3927 | 3861 | 17 | 3861 | 4 | 0 | 0.0000 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.6384 | 99.4387 | 99.8390 | 60.5902 | 2480 | 14 | 2480 | 4 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6530 | 99.7222 | 99.5839 | 69.2078 | 1436 | 4 | 1436 | 6 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4536 | 99.5624 | 99.3450 | 70.1434 | 910 | 4 | 910 | 6 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 70.0000 | 0 | 0 | 0 | 6 | 0 | 0.0000 | ||
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 17.3913 | 100.0000 | 9.5238 | 78.5714 | 2 | 0 | 2 | 19 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 23.5294 | 100.0000 | 13.3333 | 80.7692 | 2 | 0 | 2 | 13 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 24.0000 | 100.0000 | 13.6364 | 80.3571 | 3 | 0 | 3 | 19 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 60.0000 | 100.0000 | 42.8571 | 84.3049 | 15 | 0 | 15 | 20 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 10.5263 | 100.0000 | 5.5556 | 80.4348 | 1 | 0 | 1 | 17 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 90.5660 | 92.3077 | 88.8889 | 96.6165 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 80.0000 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.6190 | 97.6190 | 97.6190 | 89.3939 | 41 | 1 | 41 | 1 | 0 | 0.0000 | |