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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
44351-44400 / 86044 show all
bgallagher-sentieonINDELI6_15lowcmp_SimpleRepeat_diTR_51to200het
0.0000
77.7778
0.0000
98.2759
72010
0.0000
bgallagher-sentieonINDELI6_15segdup*
98.8506
98.2857
99.4220
92.6819
172317210
0.0000
bgallagher-sentieonINDELI6_15segduphet
98.1818
97.5904
98.7805
93.7690
8128110
0.0000
bgallagher-sentieonSNP*func_cds*
99.8899
99.9669
99.8129
24.1761
18144618141340
0.0000
bgallagher-sentieonSNP*func_cdshet
99.8344
99.9731
99.6961
26.0085
11158311155340
0.0000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.4872
99.3714
99.6033
48.0102
4268274268170
0.0000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.2546
99.1437
99.3657
50.4529
2663232663170
0.0000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7497
99.8706
99.6290
54.7353
617686176230
0.0000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6192
99.8219
99.4173
56.4253
392473924230
0.0000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8198
99.9742
99.6658
59.2542
387713877130
0.0000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.7200
99.9599
99.4812
60.3982
249312493130
0.0000
bgallagher-sentieonSNPtifunc_cds*
99.9094
99.9565
99.8623
22.5049
13781613779190
0.0000
bgallagher-sentieonSNPtifunc_cdshet
99.8707
99.9647
99.7769
24.1158
850138499190
0.0000
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.4759
99.4255
99.5264
47.7277
2942172942140
0.0000
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.2629
99.2900
99.2358
50.5266
1818131818140
0.0000
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7634
99.8753
99.6517
47.8261
400654006140
0.0000
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6469
99.8428
99.4518
50.2823
254042540140
0.0000
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8976
100.0000
99.7954
50.4360
24390243950
0.0000
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.8420
100.0000
99.6845
52.3308
15800158050
0.0000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.7984
99.9193
99.6778
30.7392
24762247580
0.0000
bgallagher-sentieonSNPtvfunc_cds*
99.8287
100.0000
99.6579
29.0453
437104370150
0.0000
bgallagher-sentieonSNPtvfunc_cdshet
99.7184
100.0000
99.4384
31.4601
265702656150
0.0000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.5122
99.2515
99.7743
48.6278
132610132630
0.0000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.2366
98.8304
99.6462
50.2931
8451084530
0.0000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7244
99.8620
99.5872
63.6182
21713217190
0.0000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.5683
99.7837
99.3539
64.4733
13843138490
0.0000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6883
99.9306
99.4471
68.6661
14391143980
0.0000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.5095
99.8906
99.1314
69.3307
913191380
0.0000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_51to200*
97.6190
97.6190
97.6190
89.3939
4114110
0.0000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_51to200het
97.2222
97.2222
97.2222
88.3117
3513510
0.0000
bgallagher-sentieonSNPtvsegduphet
99.2561
99.7541
98.7631
92.1695
5274135270660
0.0000
cchapple-customINDEL*map_l250_m0_e0*
92.5000
94.8718
90.2439
97.6565
7447480
0.0000
cchapple-customINDEL*map_l250_m0_e0het
89.0909
92.4528
85.9649
97.7603
4944980
0.0000
astatham-gatkSNPtifunc_cds*
99.8730
99.7897
99.9564
22.5679
13758291375660
0.0000
astatham-gatkSNPtifunc_cdshet
99.8234
99.7178
99.9293
24.2094
848024847860
0.0000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.0083
98.1431
99.8888
50.8470
179734179720
0.0000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7126
99.4764
99.9499
47.9937
399021399020
0.0000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6057
99.2925
99.9209
50.5187
252618252620
0.0000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8152
99.6720
99.9589
50.5792
24318243110
0.0000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.7464
99.5570
99.9365
52.5475
15737157310
0.0000
astatham-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.4684
98.9668
99.9751
45.9140
402342402310
0.0000
astatham-gatkSNPtvfunc_cds*
99.8283
99.7483
99.9083
29.1951
436011435940
0.0000
astatham-gatkSNPtvfunc_cdshet
99.7173
99.5860
99.8490
31.6916
264611264540
0.0000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.2844
98.6527
99.9242
48.8561
131818131810
0.0000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
98.8777
97.8947
99.8807
50.7349
8371883710
0.0000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.6312
99.4020
99.8614
63.7399
216113216130
0.0000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.4939
99.2069
99.7825
64.6320
137611137630
0.0000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5825
99.3750
99.7908
68.8193
14319143130
0.0000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.4518
99.2341
99.6703
69.5244
907790730
0.0000
astatham-gatkSNPtvlowcmp_SimpleRepeat_quadTR_51to200*
97.6190
97.6190
97.6190
89.3671
4114110
0.0000