PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43951-44000 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | I6_15 | map_l150_m1_e0 | * | 13.3333 | 8.0000 | 40.0000 | 97.7974 | 2 | 23 | 2 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m1_e0 | het | 10.5263 | 6.6667 | 25.0000 | 96.8992 | 1 | 14 | 1 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m2_e0 | * | 13.3333 | 8.0000 | 40.0000 | 98.0392 | 2 | 23 | 2 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m2_e0 | het | 10.5263 | 6.6667 | 25.0000 | 97.2973 | 1 | 14 | 1 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m2_e1 | * | 12.5000 | 7.4074 | 40.0000 | 98.1132 | 2 | 25 | 2 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m2_e1 | het | 10.0000 | 6.2500 | 25.0000 | 97.4026 | 1 | 15 | 1 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 99.2806 | 0 | 7 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 98.7013 | 0 | 4 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 99.3421 | 0 | 8 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 98.8095 | 0 | 5 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 99.3750 | 0 | 8 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 98.8889 | 0 | 5 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | I6_15 | map_siren | het | 25.8366 | 16.7832 | 56.0976 | 90.6818 | 24 | 119 | 23 | 18 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_siren | hetalt | 19.7183 | 11.1111 | 87.5000 | 93.7008 | 8 | 64 | 7 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | tech_badpromoters | * | 33.3333 | 23.0769 | 60.0000 | 66.6667 | 3 | 10 | 3 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | tech_badpromoters | het | 36.3636 | 28.5714 | 50.0000 | 63.6364 | 2 | 5 | 2 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 50.0000 | 83.3333 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 50.0000 | 60.0000 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 40.0000 | 33.3333 | 50.0000 | 98.1982 | 1 | 2 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 40.4040 | 47.6190 | 35.0877 | 98.8711 | 20 | 22 | 20 | 37 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 25.0000 | 33.3333 | 20.0000 | 98.9024 | 9 | 18 | 9 | 36 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 81.4815 | 73.3333 | 91.6667 | 98.7315 | 11 | 4 | 11 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 93.7369 | 88.2556 | 99.9442 | 59.1703 | 5373 | 715 | 5371 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 12.1212 | 28.5714 | 7.6923 | 96.3121 | 2 | 5 | 2 | 24 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | tech_badpromoters | * | 91.8033 | 89.1720 | 94.5946 | 70.5179 | 140 | 17 | 140 | 8 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | tech_badpromoters | het | 91.0256 | 92.2078 | 89.8734 | 77.4286 | 71 | 6 | 71 | 8 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 50.0000 | 71.4286 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 50.0000 | 0.0000 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 50.0000 | 50.0000 | 50.0000 | 97.1831 | 1 | 1 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 37.2093 | 50.0000 | 29.6296 | 98.7677 | 8 | 8 | 8 | 19 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 18.7500 | 30.0000 | 13.6364 | 98.7945 | 3 | 7 | 3 | 19 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 93.2439 | 87.5263 | 99.7608 | 37.2372 | 1249 | 178 | 1251 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 28.5714 | 33.3333 | 25.0000 | 98.3968 | 2 | 4 | 2 | 6 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | ti | tech_badpromoters | * | 94.0476 | 92.9412 | 95.1807 | 61.3953 | 79 | 6 | 79 | 4 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | ti | tech_badpromoters | het | 93.3333 | 95.4545 | 91.3043 | 68.9189 | 42 | 2 | 42 | 4 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | func_cds | * | 99.2890 | 99.0391 | 99.5401 | 39.3276 | 4329 | 42 | 4329 | 20 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | func_cds | het | 99.1144 | 98.9838 | 99.2453 | 45.4845 | 2630 | 27 | 2630 | 20 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 95.5771 | 92.0998 | 99.3274 | 67.6812 | 443 | 38 | 443 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 50.0000 | 83.3333 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 50.0000 | 60.0000 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 40.0000 | 33.3333 | 50.0000 | 98.1982 | 1 | 2 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 42.8571 | 46.1538 | 40.0000 | 98.9510 | 12 | 14 | 12 | 18 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 30.0000 | 35.2941 | 26.0870 | 98.9890 | 6 | 11 | 6 | 17 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 75.0000 | 66.6667 | 85.7143 | 98.7973 | 6 | 3 | 6 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 91.6132 | 84.5897 | 99.9088 | 64.9616 | 3288 | 599 | 3285 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 20.0000 | 16.6667 | 25.0000 | 97.2973 | 1 | 5 | 1 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 92.2078 | 0 | 1 | 0 | 18 | 0 | 0.0000 | ||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 91.2621 | 0 | 1 | 0 | 18 | 0 | 0.0000 | ||
| gduggal-snapplat | SNP | tv | map_l125_m1_e0 | homalt | 93.4557 | 87.7304 | 99.9806 | 69.1888 | 5141 | 719 | 5142 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | map_l125_m2_e0 | homalt | 93.5527 | 87.9009 | 99.9811 | 71.5032 | 5289 | 728 | 5290 | 1 | 0 | 0.0000 | |