PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43851-43900 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 66.6667 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 92.0000 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 90.4762 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 33.3333 | 95.5224 | 0 | 1 | 1 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 96.1538 | 0 | 1 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 66.6667 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 66.6667 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | D1_5 | func_cds | * | 86.3919 | 81.7610 | 91.5789 | 51.7766 | 130 | 29 | 174 | 16 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | func_cds | het | 81.7516 | 78.8235 | 84.9057 | 60.5948 | 67 | 18 | 90 | 16 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m0_e0 | homalt | 86.0150 | 75.9690 | 99.1228 | 89.0173 | 196 | 62 | 226 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m1_e0 | homalt | 86.8336 | 77.6504 | 98.4802 | 88.9449 | 271 | 78 | 324 | 5 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e0 | homalt | 87.4375 | 78.5714 | 98.5591 | 89.4013 | 286 | 78 | 342 | 5 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e1 | homalt | 87.2327 | 78.2258 | 98.5836 | 89.4248 | 291 | 81 | 348 | 5 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m1_e0 | homalt | 83.1300 | 71.9298 | 98.4615 | 91.6560 | 164 | 64 | 192 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m2_e0 | homalt | 84.2469 | 73.5537 | 98.5782 | 91.9064 | 178 | 64 | 208 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m2_e1 | homalt | 84.2502 | 73.7903 | 98.1651 | 91.8045 | 183 | 65 | 214 | 4 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l250_m0_e0 | * | 82.6230 | 78.2609 | 87.5000 | 98.7626 | 36 | 10 | 42 | 6 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l250_m0_e0 | het | 80.7713 | 78.7879 | 82.8571 | 98.8267 | 26 | 7 | 29 | 6 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | segdup | hetalt | 60.6593 | 46.1538 | 88.4615 | 98.5126 | 24 | 28 | 23 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | tech_badpromoters | homalt | 75.0000 | 66.6667 | 85.7143 | 65.0000 | 6 | 3 | 6 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | func_cds | * | 38.1503 | 25.5814 | 75.0000 | 63.6364 | 11 | 32 | 6 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | func_cds | het | 39.0244 | 27.5862 | 66.6667 | 64.7059 | 8 | 21 | 4 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 36.9771 | 25.1969 | 69.4444 | 73.3333 | 32 | 95 | 25 | 11 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 43.2741 | 27.9883 | 95.3488 | 70.3448 | 96 | 247 | 82 | 4 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m0_e0 | * | 42.7650 | 28.1553 | 88.8889 | 96.7332 | 29 | 74 | 16 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m0_e0 | het | 47.3684 | 33.3333 | 81.8182 | 96.8208 | 20 | 40 | 9 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m0_e0 | * | 48.0801 | 34.0426 | 81.8182 | 97.4713 | 16 | 31 | 9 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m0_e0 | het | 46.5116 | 34.4828 | 71.4286 | 97.4638 | 10 | 19 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m0_e0 | * | 49.0706 | 34.3750 | 85.7143 | 98.0609 | 11 | 21 | 6 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m0_e0 | het | 48.6957 | 35.0000 | 80.0000 | 97.7578 | 7 | 13 | 4 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | segdup | hetalt | 58.4071 | 42.8571 | 91.6667 | 93.2394 | 21 | 28 | 22 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | tech_badpromoters | * | 10.5263 | 5.8824 | 50.0000 | 85.7143 | 1 | 16 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | tech_badpromoters | homalt | 0.0000 | 0.0000 | 80.0000 | 0 | 6 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | I1_5 | func_cds | het | 52.4590 | 54.2373 | 50.7937 | 72.0000 | 32 | 27 | 32 | 31 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 3.7037 | 11.1111 | 2.2222 | 94.8276 | 3 | 24 | 1 | 44 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 3.5430 | 9.8039 | 2.1622 | 93.6492 | 5 | 46 | 4 | 181 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 22.7901 | 26.5957 | 19.9372 | 79.3316 | 125 | 345 | 127 | 510 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 90.3030 | 0 | 2 | 0 | 16 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | I1_5 | map_l125_m0_e0 | het | 80.9783 | 77.6042 | 84.6591 | 95.8412 | 149 | 43 | 149 | 27 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m0_e0 | homalt | 85.1946 | 78.0702 | 93.7500 | 92.5869 | 89 | 25 | 90 | 6 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m1_e0 | homalt | 87.6815 | 81.3456 | 95.0877 | 89.5871 | 266 | 61 | 271 | 14 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m2_e0 | homalt | 87.6927 | 81.2317 | 95.2703 | 90.2632 | 277 | 64 | 282 | 14 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m2_e1 | homalt | 87.5932 | 81.0496 | 95.2862 | 90.4348 | 278 | 65 | 283 | 14 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m0_e0 | het | 78.8177 | 75.4717 | 82.4742 | 97.1579 | 80 | 26 | 80 | 17 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m0_e0 | homalt | 85.9772 | 77.6119 | 96.3636 | 94.7267 | 52 | 15 | 53 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m1_e0 | homalt | 86.3828 | 79.7980 | 94.1520 | 92.3181 | 158 | 40 | 161 | 10 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m2_e0 | homalt | 86.3737 | 80.0995 | 93.7143 | 93.0223 | 161 | 40 | 164 | 11 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m2_e1 | homalt | 86.2888 | 79.9020 | 93.7853 | 93.0913 | 163 | 41 | 166 | 11 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l250_m0_e0 | * | 72.7273 | 66.6667 | 80.0000 | 99.2416 | 16 | 8 | 16 | 4 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l250_m0_e0 | het | 68.9655 | 66.6667 | 71.4286 | 99.2802 | 10 | 5 | 10 | 4 | 0 | 0.0000 | |