PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43801-43850 / 86044 show all | |||||||||||||||
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 33.3333 | 100.0000 | 20.0000 | 50.0000 | 1 | 0 | 1 | 4 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.7189 | 99.8474 | 97.6155 | 43.1356 | 1309 | 2 | 1310 | 32 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 79.5455 | 0 | 0 | 0 | 9 | 0 | 0.0000 | ||
| gduggal-snapfb | SNP | tv | map_l100_m0_e0 | hetalt | 93.7500 | 93.7500 | 93.7500 | 91.5344 | 15 | 1 | 15 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l100_m1_e0 | hetalt | 93.9759 | 95.1220 | 92.8571 | 85.7627 | 39 | 2 | 39 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l100_m2_e0 | hetalt | 94.1176 | 95.2381 | 93.0233 | 86.3924 | 40 | 2 | 40 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l100_m2_e1 | hetalt | 94.2529 | 95.3488 | 93.1818 | 86.1635 | 41 | 2 | 41 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l125_m1_e0 | hetalt | 91.8033 | 93.3333 | 90.3226 | 86.9198 | 28 | 2 | 28 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l125_m2_e0 | hetalt | 91.8033 | 93.3333 | 90.3226 | 87.8431 | 28 | 2 | 28 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l125_m2_e1 | hetalt | 91.8033 | 93.3333 | 90.3226 | 87.9377 | 28 | 2 | 28 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l150_m1_e0 | hetalt | 92.3077 | 90.0000 | 94.7368 | 90.6404 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l150_m2_e0 | hetalt | 92.3077 | 90.0000 | 94.7368 | 91.0798 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l150_m2_e1 | hetalt | 92.3077 | 90.0000 | 94.7368 | 91.1215 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l250_m2_e0 | hetalt | 83.3333 | 100.0000 | 71.4286 | 95.0000 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l250_m2_e1 | hetalt | 83.3333 | 100.0000 | 71.4286 | 95.0000 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_siren | hetalt | 96.3415 | 97.5309 | 95.1807 | 83.3333 | 79 | 2 | 79 | 4 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | tech_badpromoters | het | 85.3333 | 96.9697 | 76.1905 | 70.4225 | 32 | 1 | 32 | 10 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | func_cds | het | 59.9589 | 51.8692 | 71.0383 | 65.2751 | 111 | 103 | 130 | 53 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l125_m0_e0 | homalt | 81.8078 | 70.7746 | 96.9163 | 92.3518 | 201 | 83 | 220 | 7 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l125_m1_e0 | homalt | 84.6016 | 75.1366 | 96.7949 | 89.4755 | 550 | 182 | 604 | 20 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l125_m2_e0 | homalt | 84.9635 | 75.6225 | 96.9372 | 90.0183 | 577 | 186 | 633 | 20 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l125_m2_e1 | homalt | 84.7865 | 75.3230 | 96.9697 | 90.1183 | 583 | 191 | 640 | 20 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l150_m0_e0 | homalt | 81.8840 | 70.1220 | 98.3871 | 94.7657 | 115 | 49 | 122 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l150_m1_e0 | homalt | 82.5287 | 72.0779 | 96.5241 | 92.1114 | 333 | 129 | 361 | 13 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l150_m2_e0 | homalt | 83.0837 | 72.9730 | 96.4467 | 92.5730 | 351 | 130 | 380 | 14 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l150_m2_e1 | homalt | 82.8857 | 72.7642 | 96.2779 | 92.5618 | 358 | 134 | 388 | 15 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l250_m0_e0 | * | 75.6398 | 67.9487 | 85.2941 | 98.9759 | 53 | 25 | 58 | 10 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l250_m0_e0 | het | 73.2968 | 67.9245 | 79.5918 | 99.0360 | 36 | 17 | 39 | 10 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l250_m1_e0 | homalt | 81.1033 | 68.8073 | 98.7500 | 97.0105 | 75 | 34 | 79 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l250_m2_e0 | homalt | 81.0457 | 68.6957 | 98.8095 | 97.2495 | 79 | 36 | 83 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l250_m2_e1 | homalt | 81.2379 | 68.9655 | 98.8235 | 97.2835 | 80 | 36 | 84 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | tech_badpromoters | homalt | 53.0612 | 39.3939 | 81.2500 | 71.9298 | 13 | 20 | 13 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | C1_5 | * | * | 14.8148 | 40.0000 | 9.0909 | 92.7632 | 4 | 6 | 1 | 10 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | C1_5 | * | het | 0.0000 | 33.3333 | 0.0000 | 92.0354 | 3 | 6 | 0 | 9 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 50.0000 | 93.5484 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | C1_5 | HG002complexvar | * | 16.6667 | 14.2857 | 20.0000 | 81.4815 | 1 | 6 | 1 | 4 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | C1_5 | HG002complexvar | het | 0.0000 | 14.2857 | 0.0000 | 84.2105 | 1 | 6 | 0 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 50.0000 | 66.6667 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 90.9091 | 0 | 3 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 87.5000 | 0 | 3 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 33.3333 | 95.5224 | 0 | 1 | 1 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 96.1538 | 0 | 1 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 93.3333 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 90.9091 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 83.3333 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 80.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 87.5000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 87.5000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 66.6667 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||