PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43751-43800 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m0_e0 | * | 54.5455 | 42.8571 | 75.0000 | 89.1892 | 3 | 4 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m0_e0 | het | 54.5455 | 42.8571 | 75.0000 | 88.2353 | 3 | 4 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m1_e0 | * | 31.5789 | 20.0000 | 75.0000 | 94.3662 | 3 | 12 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m1_e0 | het | 33.3333 | 21.4286 | 75.0000 | 94.0299 | 3 | 11 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m2_e0 | * | 28.5714 | 17.6471 | 75.0000 | 95.3488 | 3 | 14 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m2_e0 | het | 30.0000 | 18.7500 | 75.0000 | 95.0617 | 3 | 13 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m2_e1 | * | 27.2727 | 16.6667 | 75.0000 | 95.4023 | 3 | 15 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m2_e1 | het | 30.0000 | 18.7500 | 75.0000 | 95.1220 | 3 | 13 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m0_e0 | * | 66.6667 | 100.0000 | 50.0000 | 88.2353 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m0_e0 | het | 66.6667 | 100.0000 | 50.0000 | 85.7143 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m1_e0 | * | 33.3333 | 25.0000 | 50.0000 | 94.5946 | 1 | 3 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m1_e0 | het | 40.0000 | 33.3333 | 50.0000 | 93.9394 | 1 | 2 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m2_e0 | * | 28.5714 | 20.0000 | 50.0000 | 95.4545 | 1 | 4 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m2_e0 | het | 40.0000 | 33.3333 | 50.0000 | 95.0000 | 1 | 2 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m2_e1 | * | 28.5714 | 20.0000 | 50.0000 | 95.5556 | 1 | 4 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m2_e1 | het | 40.0000 | 33.3333 | 50.0000 | 95.1220 | 1 | 2 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D1_5 | decoy | * | 77.4194 | 75.0000 | 80.0000 | 99.9600 | 3 | 1 | 4 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D1_5 | decoy | het | 85.7143 | 100.0000 | 75.0000 | 99.9649 | 2 | 0 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 83.3333 | 0 | 13 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | D6_15 | decoy | * | 0.0000 | 0.0000 | 50.0000 | 99.8106 | 0 | 1 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D6_15 | decoy | het | 0.0000 | 0.0000 | 50.0000 | 99.7998 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 57.1429 | 50.0000 | 66.6667 | 98.6364 | 3 | 3 | 2 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 66.6667 | 66.6667 | 66.6667 | 98.5646 | 2 | 1 | 2 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 70.5882 | 75.0000 | 66.6667 | 98.5849 | 3 | 1 | 2 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 80.0000 | 100.0000 | 66.6667 | 98.5075 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 86.6667 | 0 | 26 | 0 | 4 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 86.2069 | 0 | 3 | 0 | 4 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 87.5000 | 84.6154 | 0 | 6 | 7 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 87.5000 | 84.3137 | 0 | 3 | 7 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l125_m2_e1 | hetalt | 93.8776 | 95.8333 | 92.0000 | 85.4651 | 23 | 1 | 23 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l150_m1_e0 | hetalt | 93.3333 | 93.3333 | 93.3333 | 88.4615 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l150_m2_e0 | hetalt | 93.3333 | 93.3333 | 93.3333 | 89.2086 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l150_m2_e1 | hetalt | 93.3333 | 93.3333 | 93.3333 | 89.2086 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l250_m2_e0 | hetalt | 90.9091 | 100.0000 | 83.3333 | 93.2584 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l250_m2_e1 | hetalt | 90.9091 | 100.0000 | 83.3333 | 93.2584 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_siren | hetalt | 96.5517 | 98.2456 | 94.9153 | 82.4405 | 56 | 1 | 56 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | tech_badpromoters | * | 95.5056 | 100.0000 | 91.3978 | 56.9444 | 85 | 0 | 85 | 8 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | tech_badpromoters | het | 92.6316 | 100.0000 | 86.2745 | 57.1429 | 44 | 0 | 44 | 7 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | tech_badpromoters | homalt | 98.7952 | 100.0000 | 97.6190 | 56.7010 | 41 | 0 | 41 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | func_cds | * | 99.4084 | 99.9542 | 98.8685 | 34.6495 | 4369 | 2 | 4369 | 50 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | func_cds | het | 99.0857 | 99.9247 | 98.2605 | 37.4682 | 2655 | 2 | 2655 | 47 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | func_cds | homalt | 99.9120 | 100.0000 | 99.8243 | 29.4045 | 1704 | 0 | 1704 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 92.1348 | 0 | 0 | 0 | 7 | 0 | 0.0000 | ||
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 8.3333 | 100.0000 | 4.3478 | 75.7895 | 1 | 0 | 1 | 22 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 11.7647 | 100.0000 | 6.2500 | 67.3469 | 1 | 0 | 1 | 15 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 75.0000 | 0 | 0 | 0 | 37 | 0 | 0.0000 | ||
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 83.3333 | 100.0000 | 71.4286 | 70.8333 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 40.0000 | 100.0000 | 25.0000 | 68.2540 | 5 | 0 | 5 | 15 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 77.7778 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 33.3333 | 66.6667 | 22.2222 | 92.5620 | 4 | 2 | 4 | 14 | 0 | 0.0000 | |