PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
3501-3550 / 86044 show all
raldana-dualsentieonSNP*map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
87.8049
50500
raldana-dualsentieonSNP*map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
88.0952
50500
raldana-dualsentieonSNP*segduphetalt
100.0000
100.0000
100.0000
96.2766
70700
raldana-dualsentieonSNP*segdupwithalt*
0.0000
100.0000
00000
raldana-dualsentieonSNP*segdupwithalthet
0.0000
100.0000
00000
raldana-dualsentieonSNP*segdupwithalthetalt
0.0000
100.0000
00000
raldana-dualsentieonSNP*segdupwithalthomalt
0.0000
100.0000
00000
raldana-dualsentieonSNP*tech_badpromotershet
98.0132
96.1039
100.0000
46.3768
7437400
raldana-dualsentieonSNP*tech_badpromotershetalt
0.0000
0.0000
0.0000
00000
raldana-dualsentieonSNPtiHG002complexvarhetalt
99.5146
99.0338
100.0000
34.5048
205220500
raldana-dualsentieonSNPtiHG002compoundhethetalt
99.8270
99.6546
100.0000
21.4966
577257700
raldana-dualsentieonSNPtidecoy*
0.0000
100.0000
00000
raldana-dualsentieonSNPtidecoyhet
0.0000
100.0000
00000
raldana-dualsentieonSNPtidecoyhetalt
0.0000
100.0000
00000
raldana-dualsentieonSNPtidecoyhomalt
0.0000
100.0000
00000
raldana-dualsentieonSNPtifunc_cdshetalt
100.0000
100.0000
100.0000
46.6667
80800
raldana-dualsentieonSNPtifunc_cdshomalt
99.9905
99.9810
100.0000
19.3825
52741527400
raldana-dualsentieonSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
raldana-dualsentieonSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.7543
99.5098
100.0000
58.1874
12186121800
raldana-dualsentieonSNPtilowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
raldana-dualsentieonSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
raldana-dualsentieonSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
raldana-dualsentieonSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
raldana-dualsentieonSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
90.9091
83.3333
100.0000
86.8421
51500
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
81.2500
1201200
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.8668
99.7340
100.0000
42.5727
11253112500
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
50.0000
10100
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9659
99.9318
100.0000
43.3050
14651146500
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
50.0000
10100
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
46.8731
858085800
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
97.7778
95.6522
100.0000
89.8305
6636600
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
94.1176
10100
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
93.3333
10100
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
91.6667
20200
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
81.2500
1201200
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
94.1176
10100
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_diTR_51to200*
89.6552
81.2500
100.0000
97.7816
1331300
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_diTR_51to200het
82.3529
70.0000
100.0000
98.2544
73700
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
100.0000
00000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
96.7391
60600