PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
30901-30950 / 86044 show all
jlack-gatkINDELD6_15map_l250_m2_e1homalt
100.0000
100.0000
100.0000
95.5882
60600
jlack-gatkINDELD6_15segduphetalt
92.3077
85.7143
100.0000
90.2552
4274200
jlack-gatkINDELD6_15segdupwithalt*
0.0000
100.0000
00000
jlack-gatkINDELD6_15segdupwithalthet
0.0000
100.0000
00000
jlack-gatkINDELD6_15segdupwithalthetalt
0.0000
100.0000
00000
jlack-gatkINDELD6_15segdupwithalthomalt
0.0000
100.0000
00000
jlack-gatkINDELD6_15tech_badpromoters*
100.0000
100.0000
100.0000
51.4286
1701700
jlack-gatkINDELD6_15tech_badpromotershet
100.0000
100.0000
100.0000
52.3810
1001000
jlack-gatkINDELD6_15tech_badpromotershetalt
100.0000
100.0000
100.0000
0.0000
10100
jlack-gatkINDELD6_15tech_badpromotershomalt
100.0000
100.0000
100.0000
53.8462
60600
jlack-gatkINDELI16_PLUSdecoy*
0.0000
100.0000
00000
jlack-gatkINDELI16_PLUSdecoyhet
0.0000
100.0000
00000
jlack-gatkINDELI16_PLUSdecoyhetalt
0.0000
100.0000
00000
jlack-gatkINDELI16_PLUSdecoyhomalt
0.0000
100.0000
00000
jlack-gatkINDELI16_PLUSfunc_cds*
95.6522
91.6667
100.0000
78.8462
1111100
jlack-gatkINDELI16_PLUSfunc_cdshet
100.0000
100.0000
100.0000
71.8750
90900
jlack-gatkINDELI16_PLUSfunc_cdshetalt
0.0000
100.0000
01000
jlack-gatkINDELI16_PLUSfunc_cdshomalt
100.0000
100.0000
100.0000
88.2353
20200
jlack-gatkINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
91.1392
83.7209
100.0000
77.1429
72148000
jlack-gatkINDELI16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
jlack-gatkINDELI16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
jlack-gatkINDELI16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
jlack-gatkINDELI16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
97.1429
94.4444
100.0000
84.6774
1711900
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
98.5507
97.1429
100.0000
75.5102
3413600
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
100.0000
100.0000
100.0000
75.2089
8908900
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
75.2336
5305300
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
64.2857
2002000
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
82.0225
1601600
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
88.6792
79.6610
100.0000
71.7391
47125200
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
jlack-gatkINDELI16_PLUSlowcmp_SimpleRepeat_diTR_51to200het
50.0000
100.0000
11000
jlack-gatkINDELI16_PLUSlowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
100.0000
75.0000
02100
jlack-gatkINDELI16_PLUSlowcmp_SimpleRepeat_diTR_gt200*
0.0000
0.0000
0.0000
00000
jlack-gatkINDELI16_PLUSlowcmp_SimpleRepeat_diTR_gt200het
0.0000
0.0000
0.0000
00000
jlack-gatkINDELI16_PLUSlowcmp_SimpleRepeat_diTR_gt200hetalt
0.0000
0.0000
0.0000
00000
jlack-gatkINDELI16_PLUSlowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
0.0000
0.0000
00000
jlack-gatkINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
jlack-gatkINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
jlack-gatkINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50hetalt
95.8333
92.0000
100.0000
66.6667
1611416300
jlack-gatkINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
91.6667
84.6154
100.0000
90.6383
2242200
jlack-gatkINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_51to200het
100.0000
100.0000
30000
jlack-gatkINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
90.4762
82.6087
100.0000
72.1519
1942200