PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
21551-21600 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 83.6364 | 17 | 2 | 18 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l100_m0_e0 | homalt | 93.3333 | 87.5000 | 100.0000 | 91.1765 | 21 | 3 | 21 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l100_m1_e0 | homalt | 94.2149 | 89.0625 | 100.0000 | 87.5546 | 57 | 7 | 57 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l100_m2_e0 | homalt | 94.3089 | 89.2308 | 100.0000 | 87.9418 | 58 | 7 | 58 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l100_m2_e1 | homalt | 94.4882 | 89.5522 | 100.0000 | 87.8543 | 60 | 7 | 60 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l125_m0_e0 | * | 94.3820 | 89.3617 | 100.0000 | 94.9766 | 42 | 5 | 43 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l125_m0_e0 | het | 96.4286 | 93.1034 | 100.0000 | 95.6240 | 27 | 2 | 27 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 90.9091 | 5 | 1 | 6 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l125_m0_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 94.2197 | 10 | 2 | 10 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 86.1789 | 17 | 2 | 17 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l125_m1_e0 | homalt | 95.3846 | 91.1765 | 100.0000 | 89.9676 | 31 | 3 | 31 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 87.6812 | 17 | 2 | 17 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l125_m2_e0 | homalt | 94.1176 | 88.8889 | 100.0000 | 90.2736 | 32 | 4 | 32 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 91.8919 | 85.0000 | 100.0000 | 88.1119 | 17 | 3 | 17 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l125_m2_e1 | homalt | 94.2857 | 89.1892 | 100.0000 | 90.2077 | 33 | 4 | 33 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l150_m0_e0 | * | 96.7742 | 93.7500 | 100.0000 | 95.5840 | 30 | 2 | 31 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l150_m0_e0 | het | 97.4359 | 95.0000 | 100.0000 | 96.2451 | 19 | 1 | 19 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.4737 | 5 | 0 | 6 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l150_m0_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 95.6835 | 6 | 1 | 6 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 91.2088 | 7 | 1 | 8 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l150_m1_e0 | homalt | 93.8776 | 88.4615 | 100.0000 | 90.4167 | 23 | 3 | 23 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 92.1569 | 7 | 1 | 8 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l150_m2_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 90.9434 | 24 | 4 | 24 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 87.5000 | 77.7778 | 100.0000 | 92.4528 | 7 | 2 | 8 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l150_m2_e1 | homalt | 92.5926 | 86.2069 | 100.0000 | 90.7063 | 25 | 4 | 25 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l250_m0_e0 | * | 90.9091 | 83.3333 | 100.0000 | 98.6264 | 5 | 1 | 5 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 98.4436 | 4 | 0 | 4 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | D6_15 | map_l250_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 98.7179 | 1 | 1 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l250_m1_e0 | * | 90.9091 | 83.3333 | 100.0000 | 97.6366 | 15 | 3 | 16 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l250_m1_e0 | het | 95.2381 | 90.9091 | 100.0000 | 97.9592 | 10 | 1 | 10 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.2264 | 1 | 1 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l250_m1_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 97.0149 | 4 | 1 | 4 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l250_m2_e0 | * | 92.6829 | 86.3636 | 100.0000 | 97.4392 | 19 | 3 | 20 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l250_m2_e0 | het | 96.2963 | 92.8571 | 100.0000 | 97.6991 | 13 | 1 | 13 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.8254 | 1 | 1 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l250_m2_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 96.7320 | 5 | 1 | 5 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l250_m2_e1 | * | 92.6829 | 86.3636 | 100.0000 | 97.5093 | 19 | 3 | 20 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l250_m2_e1 | het | 96.2963 | 92.8571 | 100.0000 | 97.7625 | 13 | 1 | 13 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.9231 | 1 | 1 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l250_m2_e1 | homalt | 90.9091 | 83.3333 | 100.0000 | 96.8153 | 5 | 1 | 5 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_siren | hetalt | 96.8750 | 93.9394 | 100.0000 | 76.3819 | 93 | 6 | 94 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | segdup | het | 97.2067 | 94.5652 | 100.0000 | 96.0775 | 87 | 5 | 87 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | segdup | hetalt | 93.4783 | 87.7551 | 100.0000 | 90.3587 | 43 | 6 | 43 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | D6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | D6_15 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | D6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | D6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 51.4286 | 17 | 0 | 17 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 52.3810 | 10 | 0 | 10 | 0 | 0 | ||