PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt

« 1 2 ... 38 39 40 41 42 43 44 45 46 ... 1720 1721 » 2051-2100 / 86044 show all
ltrigg-rtg2	INDEL	I1_5	map_l250_m2_e0	hetalt	100.0000	100.0000	100.0000	99.0868	2	0	2	0	0
ltrigg-rtg2	INDEL	I1_5	map_l250_m2_e0	homalt	98.8764	97.7778	100.0000	93.0599	44	1	44	0	0
ltrigg-rtg2	INDEL	I1_5	map_l250_m2_e1	hetalt	100.0000	100.0000	100.0000	99.0991	2	0	2	0	0
ltrigg-rtg2	INDEL	I1_5	map_l250_m2_e1	homalt	98.9011	97.8261	100.0000	93.1087	45	1	45	0	0
ltrigg-rtg2	INDEL	I1_5	map_siren	hetalt	98.1818	96.4286	100.0000	92.1300	108	4	109	0	0
ltrigg-rtg2	INDEL	I1_5	segdup	hetalt	100.0000	100.0000	100.0000	96.8447	48	0	52	0	0
ltrigg-rtg2	INDEL	I1_5	segdupwithalt	*		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I1_5	segdupwithalt	het		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I1_5	segdupwithalt	hetalt		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I1_5	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I1_5	tech_badpromoters	hetalt	100.0000	100.0000	100.0000	50.0000	1	0	1	0	0
ltrigg-rtg2	INDEL	I1_5	tech_badpromoters	homalt	100.0000	100.0000	100.0000	56.6667	13	0	13	0	0
ltrigg-rtg2	INDEL	I6_15	decoy	*		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	decoy	het		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	decoy	hetalt		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	decoy	homalt		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	func_cds	*	98.8235	97.6744	100.0000	33.3333	42	1	42	0	0
ltrigg-rtg2	INDEL	I6_15	func_cds	het	100.0000	100.0000	100.0000	34.2857	24	0	23	0	0
ltrigg-rtg2	INDEL	I6_15	func_cds	hetalt	85.7143	75.0000	100.0000	42.8571	3	1	4	0	0
ltrigg-rtg2	INDEL	I6_15	func_cds	homalt	100.0000	100.0000	100.0000	28.5714	15	0	15	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	94.8276	90.1639	100.0000	55.6452	55	6	55	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	62.1053	36	0	36	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	97.5904	95.2941	100.0000	62.7193	81	4	85	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	60.3376	92	0	94	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3763	98.7603	100.0000	63.6228	239	3	243	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.1736	98.3607	100.0000	64.2643	120	2	119	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	99.0291	98.0769	100.0000	64.9682	51	1	55	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	61.2360	68	0	69	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_51to200	het	80.0000	66.6667	100.0000	85.3659	6	3	6	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_51to200	homalt		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	het	98.3607	96.7742	100.0000	82.2823	60	2	59	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_gt10	*	100.0000	100.0000	100.0000	99.8529	2	0	2	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_gt10	het		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt	100.0000	100.0000	100.0000	99.6721	2	0	2	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_gt10	homalt		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_51to200	homalt		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5763	99.1561	100.0000	39.9497	235	2	239	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	100.0000	100.0000	100.0000	52.5000	59	0	57	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge