PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt

« 1 2 ... 37 38 39 40 41 42 43 44 45 ... 1720 1721 » 2001-2050 / 86044 show all
ltrigg-rtg2	INDEL	I1_5	decoy	het		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I1_5	decoy	hetalt		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I1_5	decoy	homalt		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I1_5	func_cds	hetalt	100.0000	100.0000	100.0000	75.0000	2	0	2	0	0
ltrigg-rtg2	INDEL	I1_5	func_cds	homalt	100.0000	100.0000	100.0000	24.6835	119	0	119	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	97.6492	95.4064	100.0000	61.3043	270	13	267	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*	100.0000	100.0000	100.0000	99.9003	1	0	1	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	98.7500	1	0	1	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.4772	97.0000	100.0000	56.4626	194	6	192	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	*	100.0000	100.0000	100.0000	99.8994	1	0	1	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	98.7179	1	0	1	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.4742	98.9540	100.0000	69.2510	473	5	468	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	99.1597	98.3333	100.0000	88.4157	59	1	68	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7101	99.4220	100.0000	73.1707	344	2	341	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	95.5414	91.4634	100.0000	66.2100	75	7	74	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	het	92.0000	85.1852	100.0000	72.8261	23	4	25	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	homalt		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.6891	99.3802	100.0000	59.1393	962	6	959	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_gt10	*	100.0000	100.0000	100.0000	99.9942	1	0	1	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_gt10	het		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt	100.0000	100.0000	100.0000	99.9910	1	0	1	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_gt10	homalt		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt	100.0000	100.0000	100.0000	96.0000	1	0	2	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_51to200	hetalt	95.4545	91.3043	100.0000	37.1429	21	2	22	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_51to200	homalt		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I1_5	map_l100_m0_e0	hetalt	100.0000	100.0000	100.0000	96.1538	9	0	10	0	0
ltrigg-rtg2	INDEL	I1_5	map_l100_m1_e0	hetalt	93.9759	88.6364	100.0000	93.3227	39	5	42	0	0
ltrigg-rtg2	INDEL	I1_5	map_l100_m2_e0	hetalt	93.9759	88.6364	100.0000	93.8053	39	5	42	0	0
ltrigg-rtg2	INDEL	I1_5	map_l100_m2_e1	hetalt	94.1176	88.8889	100.0000	93.7591	40	5	43	0	0
ltrigg-rtg2	INDEL	I1_5	map_l125_m0_e0	hetalt	100.0000	100.0000	100.0000	97.3822	4	0	5	0	0
ltrigg-rtg2	INDEL	I1_5	map_l125_m1_e0	hetalt	100.0000	100.0000	100.0000	95.4654	17	0	19	0	0
ltrigg-rtg2	INDEL	I1_5	map_l125_m2_e0	hetalt	97.2973	94.7368	100.0000	95.7627	18	1	20	0	0
ltrigg-rtg2	INDEL	I1_5	map_l125_m2_e1	hetalt	97.2973	94.7368	100.0000	95.7983	18	1	20	0	0
ltrigg-rtg2	INDEL	I1_5	map_l150_m0_e0	hetalt	100.0000	100.0000	100.0000	97.3510	3	0	4	0	0
ltrigg-rtg2	INDEL	I1_5	map_l150_m0_e0	homalt	99.2481	98.5075	100.0000	83.5476	66	1	64	0	0
ltrigg-rtg2	INDEL	I1_5	map_l150_m1_e0	hetalt	100.0000	100.0000	100.0000	96.7320	9	0	10	0	0
ltrigg-rtg2	INDEL	I1_5	map_l150_m2_e0	hetalt	100.0000	100.0000	100.0000	97.1591	9	0	10	0	0
ltrigg-rtg2	INDEL	I1_5	map_l150_m2_e1	hetalt	100.0000	100.0000	100.0000	96.9274	10	0	11	0	0
ltrigg-rtg2	INDEL	I1_5	map_l250_m0_e0	hetalt		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I1_5	map_l250_m0_e0	homalt	100.0000	100.0000	100.0000	94.1860	9	0	10	0	0
ltrigg-rtg2	INDEL	I1_5	map_l250_m1_e0	hetalt	100.0000	100.0000	100.0000	98.9011	2	0	2	0	0
ltrigg-rtg2	INDEL	I1_5	map_l250_m1_e0	homalt	98.8506	97.7273	100.0000	91.7625	43	1	43	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge