PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
17651-17700 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 2 | 0 | 2 | 0 | 0 | ||
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.4737 | 2 | 0 | 2 | 0 | 0 | ||
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.6829 | 3 | 0 | 3 | 0 | 0 | ||
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.6071 | 15 | 0 | 15 | 0 | 0 | ||
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.6522 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 97.5610 | 95.2381 | 100.0000 | 97.3009 | 40 | 2 | 40 | 0 | 0 | ||
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 96.1538 | 92.5926 | 100.0000 | 97.7558 | 25 | 2 | 25 | 0 | 0 | ||
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.9016 | 15 | 0 | 15 | 0 | 0 | ||
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 5 | 0 | 5 | 0 | 0 | ||
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 5 | 0 | 5 | 0 | 0 | ||
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9258 | 99.8517 | 100.0000 | 35.0718 | 6735 | 10 | 6735 | 0 | 0 | ||
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 93.5065 | 87.8049 | 100.0000 | 93.0097 | 36 | 5 | 36 | 0 | 0 | ||
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 95.8525 | 9 | 0 | 9 | 0 | 0 | ||
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 95.0704 | 7 | 0 | 7 | 0 | 0 | ||
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.3333 | 2 | 0 | 2 | 0 | 0 | ||
| astatham-gatk | SNP | * | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.0000 | 16 | 0 | 16 | 0 | 0 | ||
| astatham-gatk | SNP | * | map_l100_m1_e0 | hetalt | 98.7654 | 97.5610 | 100.0000 | 69.9248 | 40 | 1 | 40 | 0 | 0 | ||
| astatham-gatk | SNP | * | map_l100_m2_e0 | hetalt | 98.7952 | 97.6190 | 100.0000 | 72.2973 | 41 | 1 | 41 | 0 | 0 | ||
| astatham-gatk | SNP | * | map_l100_m2_e1 | hetalt | 98.8235 | 97.6744 | 100.0000 | 71.8121 | 42 | 1 | 42 | 0 | 0 | ||
| astatham-gatk | SNP | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.6757 | 9 | 0 | 9 | 0 | 0 | ||
| astatham-gatk | SNP | * | map_l125_m1_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 71.0000 | 29 | 1 | 29 | 0 | 0 | ||
| astatham-gatk | SNP | * | map_l125_m2_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 75.6303 | 29 | 1 | 29 | 0 | 0 | ||
| astatham-gatk | SNP | * | map_l125_m2_e1 | hetalt | 98.3051 | 96.6667 | 100.0000 | 75.6303 | 29 | 1 | 29 | 0 | 0 | ||
| astatham-gatk | SNP | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.2857 | 3 | 0 | 3 | 0 | 0 | ||
| astatham-gatk | SNP | * | map_l150_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 75.9494 | 19 | 1 | 19 | 0 | 0 | ||
| astatham-gatk | SNP | * | map_l150_m2_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 79.5699 | 19 | 1 | 19 | 0 | 0 | ||
| astatham-gatk | SNP | * | map_l150_m2_e1 | hetalt | 97.4359 | 95.0000 | 100.0000 | 79.5699 | 19 | 1 | 19 | 0 | 0 | ||
| astatham-gatk | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | SNP | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.7436 | 4 | 0 | 4 | 0 | 0 | ||
| astatham-gatk | SNP | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.3617 | 5 | 0 | 5 | 0 | 0 | ||
| astatham-gatk | SNP | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.3617 | 5 | 0 | 5 | 0 | 0 | ||
| astatham-gatk | SNP | * | map_siren | hetalt | 98.7500 | 97.5309 | 100.0000 | 69.1406 | 79 | 2 | 79 | 0 | 0 | ||
| astatham-gatk | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6825 | 7 | 0 | 7 | 0 | 0 | ||
| astatham-gatk | SNP | * | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | SNP | * | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | SNP | * | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | SNP | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||