PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
15601-15650 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 100.0000 | 94.1176 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 53.5354 | 1 | 0 | 46 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | SNP | tv | segdupwithalt | * | 0.0000 | 0.0000 | 100.0000 | 99.9988 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | SNP | tv | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | SNP | tv | segdupwithalt | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9963 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | SNP | tv | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 53.7500 | 39 | 0 | 37 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | decoy | * | 82.3529 | 70.0000 | 100.0000 | 99.9638 | 7 | 3 | 7 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | decoy | het | 66.6667 | 50.0000 | 100.0000 | 99.9731 | 3 | 3 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9253 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | func_cds | homalt | 97.9684 | 96.0177 | 100.0000 | 32.8173 | 217 | 9 | 217 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 90.9091 | 83.3333 | 100.0000 | 99.4632 | 10 | 2 | 11 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 94.7368 | 90.0000 | 100.0000 | 99.4962 | 9 | 1 | 10 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 50.0000 | 33.3333 | 100.0000 | 98.7654 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 66.6667 | 50.0000 | 100.0000 | 98.5075 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 66.6667 | 50.0000 | 100.0000 | 99.9681 | 8 | 8 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | * | map_l100_m0_e0 | hetalt | 84.2105 | 72.7273 | 100.0000 | 94.4444 | 24 | 9 | 12 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l125_m0_e0 | hetalt | 90.0000 | 81.8182 | 100.0000 | 97.4194 | 9 | 2 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l125_m1_e0 | hetalt | 90.4110 | 82.5000 | 100.0000 | 95.1952 | 33 | 7 | 16 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l125_m2_e0 | hetalt | 89.4737 | 80.9524 | 100.0000 | 95.5381 | 34 | 8 | 17 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l125_m2_e1 | hetalt | 88.3117 | 79.0698 | 100.0000 | 95.5959 | 34 | 9 | 17 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l150_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 97.4790 | 8 | 1 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l150_m1_e0 | hetalt | 86.4865 | 76.1905 | 100.0000 | 96.5116 | 16 | 5 | 9 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l150_m2_e0 | hetalt | 86.4865 | 76.1905 | 100.0000 | 96.9283 | 16 | 5 | 9 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l150_m2_e1 | hetalt | 85.0000 | 73.9130 | 100.0000 | 96.6667 | 17 | 6 | 10 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | * | map_l250_m0_e0 | homalt | 97.9592 | 96.0000 | 100.0000 | 98.0551 | 24 | 1 | 24 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.7941 | 4 | 2 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.1707 | 4 | 2 | 3 | 0 | 0 | ||