PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
15551-15600 / 86044 show all
eyeh-varpipeSNPtimap_l100_m0_e0hetalt
100.0000
100.0000
100.0000
68.8705
14011300
eyeh-varpipeSNPtimap_l125_m0_e0hetalt
100.0000
100.0000
100.0000
75.0988
806300
eyeh-varpipeSNPtimap_l125_m1_e0hetalt
100.0000
100.0000
100.0000
67.5456
24016000
eyeh-varpipeSNPtimap_l125_m2_e0hetalt
100.0000
100.0000
100.0000
69.4885
24017300
eyeh-varpipeSNPtimap_l125_m2_e1hetalt
100.0000
100.0000
100.0000
69.2308
24017600
eyeh-varpipeSNPtimap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
78.1726
304300
eyeh-varpipeSNPtimap_l150_m1_e0hetalt
100.0000
100.0000
100.0000
71.8157
15010400
eyeh-varpipeSNPtimap_l150_m2_e0hetalt
100.0000
100.0000
100.0000
73.2861
15011300
eyeh-varpipeSNPtimap_l150_m2_e1hetalt
100.0000
100.0000
100.0000
73.0679
15011500
eyeh-varpipeSNPtimap_l250_m0_e0hetalt
0.0000
0.0000
100.0000
94.3182
00500
eyeh-varpipeSNPtimap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
86.8571
402300
eyeh-varpipeSNPtimap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
86.8293
502700
eyeh-varpipeSNPtimap_l250_m2_e1hetalt
100.0000
100.0000
100.0000
87.0813
502700
eyeh-varpipeSNPtisegdupwithalthetalt
0.0000
100.0000
00000
eyeh-varpipeSNPtisegdupwithalthomalt
0.0000
0.0000
100.0000
99.9980
00100
eyeh-varpipeSNPtitech_badpromotershetalt
0.0000
100.0000
00000
eyeh-varpipeSNPtitech_badpromotershomalt
100.0000
100.0000
100.0000
44.5946
4104100
eyeh-varpipeSNPtvdecoy*
0.0000
0.0000
100.0000
99.9914
00400
eyeh-varpipeSNPtvdecoyhet
0.0000
0.0000
100.0000
99.9939
00200
eyeh-varpipeSNPtvdecoyhetalt
0.0000
100.0000
00000
eyeh-varpipeSNPtvdecoyhomalt
0.0000
0.0000
100.0000
99.9851
00200
eyeh-varpipeSNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
67.8571
1001800
eyeh-varpipeSNPtvfunc_cdshomalt
100.0000
100.0000
100.0000
26.3664
17040168400
eyeh-varpipeSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
100.0000
91.7431
00900
eyeh-varpipeSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
eyeh-varpipeSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
eyeh-varpipeSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
eyeh-varpipeSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
100.0000
86.2745
00700
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
85.8696
101300
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
87.5000
10800
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
100.0000
97.6744
00100
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
81.8841
205000
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
79.4979
204900
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
86.9478
306500
eyeh-varpipeSNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
64.9123
1016000
eyeh-varpipeSNPtvlowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
100.0000
00000
eyeh-varpipeSNPtvlowcmp_SimpleRepeat_diTR_gt200*
0.0000
100.0000
00000
eyeh-varpipeSNPtvlowcmp_SimpleRepeat_diTR_gt200het
0.0000
100.0000
00000
eyeh-varpipeSNPtvlowcmp_SimpleRepeat_diTR_gt200hetalt
0.0000
0.0000
0.0000
00000
eyeh-varpipeSNPtvlowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
0.0000
0.0000
00000
eyeh-varpipeSNPtvlowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000