PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt

« 1 2 ... 239 240 241 242 243 244 245 246 247 ... 1720 1721 » 12101-12150 / 86044 show all
gduggal-bwavard	SNP	ti	map_l125_m2_e0	hetalt		0.0000	0.0000	0.0000	0	24	0	0	0
gduggal-bwavard	SNP	ti	map_l125_m2_e1	hetalt		0.0000	0.0000	0.0000	0	24	0	0	0
gduggal-bwavard	SNP	ti	map_l150_m0_e0	hetalt		0.0000	0.0000	0.0000	0	3	0	0	0
gduggal-bwavard	SNP	ti	map_l150_m1_e0	hetalt		0.0000	0.0000	0.0000	0	15	0	0	0
gduggal-bwavard	SNP	ti	map_l150_m2_e0	hetalt		0.0000	0.0000	0.0000	0	15	0	0	0
gduggal-bwavard	SNP	ti	map_l150_m2_e1	hetalt		0.0000	0.0000	0.0000	0	15	0	0	0
gduggal-bwavard	SNP	ti	map_l250_m0_e0	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-bwavard	SNP	ti	map_l250_m1_e0	hetalt		0.0000	0.0000	0.0000	0	4	0	0	0
gduggal-bwavard	SNP	ti	map_l250_m2_e0	hetalt		0.0000	0.0000	0.0000	0	5	0	0	0
gduggal-bwavard	SNP	ti	map_l250_m2_e1	hetalt		0.0000	0.0000	0.0000	0	5	0	0	0
gduggal-bwavard	SNP	ti	map_siren	hetalt	0.0000	1.7544	0.0000	0.0000	1	56	0	0	0
gduggal-bwavard	SNP	ti	segdup	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
gduggal-bwavard	SNP	ti	segdupwithalt	*		0.0000		100.0000	0	0	0	0	0
gduggal-bwavard	SNP	ti	segdupwithalt	het		0.0000		100.0000	0	0	0	0	0
gduggal-bwavard	SNP	ti	segdupwithalt	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-bwavard	SNP	ti	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
gduggal-bwavard	SNP	ti	tech_badpromoters	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-bwavard	SNP	ti	tech_badpromoters	homalt	93.5065	87.8049	100.0000	38.9831	36	5	36	0	0
gduggal-bwavard	SNP	tv	*	hetalt	0.0000	0.6889	0.0000	0.0000	6	865	0	0	0
gduggal-bwavard	SNP	tv	HG002complexvar	hetalt	0.0000	1.9355	0.0000	0.0000	6	304	0	0	0
gduggal-bwavard	SNP	tv	HG002compoundhet	hetalt	0.0000	0.6961	0.0000	0.0000	6	856	0	0	0
gduggal-bwavard	SNP	tv	decoy	*	0.0000	0.0000	100.0000	99.9989	0	0	1	0	0
gduggal-bwavard	SNP	tv	decoy	het		0.0000		100.0000	0	0	0	0	0
gduggal-bwavard	SNP	tv	decoy	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-bwavard	SNP	tv	decoy	homalt	0.0000	0.0000	100.0000	99.9905	0	0	1	0	0
gduggal-bwavard	SNP	tv	func_cds	hetalt		0.0000	0.0000	0.0000	0	10	0	0	0
gduggal-bwavard	SNP	tv	func_cds	homalt	99.3503	98.7089	100.0000	25.9620	1682	22	1674	0	0
gduggal-bwavard	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-bwavard	SNP	tv	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
gduggal-bwavard	SNP	tv	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
gduggal-bwavard	SNP	tv	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-bwavard	SNP	tv	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
gduggal-bwavard	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	13	0	0	0
gduggal-bwavard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt		0.0000	0.0000	0.0000	0	15	0	0	0
gduggal-bwavard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-bwavard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.7368	97.5052	100.0000	47.4691	469	12	467	0	0
gduggal-bwavard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
gduggal-bwavard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
gduggal-bwavard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-bwavard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
gduggal-bwavard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	1	0	0	0
gduggal-bwavard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	1	0	0	0
gduggal-bwavard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-bwavard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
gduggal-bwavard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
gduggal-bwavard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-bwavard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
gduggal-bwavard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
gduggal-bwavard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
gduggal-bwavard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	3	0	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge