PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85701-85750 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 59.2593 | 72.7273 | 50.0000 | 99.8444 | 8 | 3 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 63.6364 | 87.5000 | 50.0000 | 99.8246 | 7 | 1 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 61.5385 | 80.0000 | 50.0000 | 99.8383 | 8 | 2 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 99.8173 | 7 | 0 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.5107 | 97.2293 | 99.8263 | 49.4968 | 9896 | 282 | 9768 | 17 | 17 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 3.9487 | 2.0305 | 71.4286 | 91.6667 | 4 | 193 | 5 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m0_e0 | homalt | 94.2676 | 90.5405 | 98.3146 | 84.3310 | 134 | 14 | 175 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m1_e0 | homalt | 94.5554 | 91.1175 | 98.2630 | 80.1576 | 318 | 31 | 396 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e0 | homalt | 94.7867 | 91.4835 | 98.3373 | 80.8636 | 333 | 31 | 414 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e1 | homalt | 94.7515 | 91.3978 | 98.3607 | 80.9715 | 340 | 32 | 420 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m0_e0 | homalt | 94.6075 | 90.5882 | 99.0000 | 88.8143 | 77 | 8 | 99 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m1_e0 | homalt | 94.6446 | 90.7895 | 98.8417 | 83.6490 | 207 | 21 | 256 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m2_e0 | homalt | 94.9644 | 91.3223 | 98.9091 | 84.1224 | 221 | 21 | 272 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m2_e1 | homalt | 94.8670 | 91.1290 | 98.9247 | 84.2195 | 226 | 22 | 276 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m1_e0 | homalt | 96.6161 | 94.7368 | 98.5714 | 91.8510 | 54 | 3 | 69 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m2_e0 | homalt | 96.8071 | 95.0000 | 98.6842 | 92.0000 | 57 | 3 | 75 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m2_e1 | homalt | 96.8153 | 95.0000 | 98.7013 | 92.1026 | 57 | 3 | 76 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | segdup | homalt | 90.9566 | 86.6295 | 95.7386 | 91.9173 | 311 | 48 | 337 | 15 | 15 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | HG002compoundhet | homalt | 40.5797 | 29.1667 | 66.6667 | 85.0000 | 7 | 17 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 7.0203 | 3.6545 | 88.8889 | 79.5455 | 22 | 580 | 8 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 21.6505 | 12.3145 | 89.5161 | 61.9632 | 448 | 3190 | 333 | 39 | 39 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 17.8608 | 9.9044 | 90.8088 | 60.0587 | 373 | 3393 | 247 | 25 | 25 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 20.4082 | 11.6279 | 83.3333 | 78.5714 | 5 | 38 | 5 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 34.9312 | 22.1925 | 82.0000 | 62.4060 | 83 | 291 | 41 | 9 | 9 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 36.0211 | 23.0321 | 82.6087 | 60.0000 | 79 | 264 | 38 | 8 | 8 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 14.5215 | 7.8459 | 97.3510 | 52.6646 | 220 | 2584 | 147 | 4 | 4 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 15.8160 | 8.6076 | 97.2973 | 51.3158 | 204 | 2166 | 144 | 4 | 4 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 17.3176 | 9.5419 | 93.5644 | 56.5591 | 302 | 2863 | 189 | 13 | 13 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 17.8608 | 9.9044 | 90.8088 | 60.0587 | 373 | 3393 | 247 | 25 | 25 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 17.3710 | 9.5750 | 93.4911 | 35.2490 | 187 | 1766 | 158 | 11 | 11 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 54.2811 | 37.8378 | 96.0000 | 79.1667 | 28 | 46 | 24 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 33.3333 | 0.0000 | 99.6894 | 2 | 4 | 0 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 20.0923 | 11.4118 | 83.9506 | 41.7266 | 97 | 753 | 68 | 13 | 13 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 25.7312 | 15.1242 | 86.1538 | 28.5714 | 67 | 376 | 56 | 9 | 9 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m0_e0 | homalt | 59.7285 | 45.8333 | 85.7143 | 82.2785 | 11 | 13 | 12 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m1_e0 | homalt | 57.6307 | 42.1875 | 90.9091 | 76.0870 | 27 | 37 | 30 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m2_e0 | homalt | 58.4551 | 43.0769 | 90.9091 | 76.7606 | 28 | 37 | 30 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m2_e1 | homalt | 57.2597 | 41.7910 | 90.9091 | 76.9231 | 28 | 39 | 30 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m1_e0 | homalt | 59.4059 | 44.1176 | 90.9091 | 79.0476 | 15 | 19 | 20 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e0 | homalt | 59.7865 | 44.4444 | 91.3043 | 78.7037 | 16 | 20 | 21 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e1 | homalt | 58.6900 | 43.2432 | 91.3043 | 78.8991 | 16 | 21 | 21 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m1_e0 | homalt | 61.5385 | 46.1538 | 92.3077 | 85.2273 | 12 | 14 | 12 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m2_e0 | homalt | 62.0102 | 46.4286 | 93.3333 | 84.5361 | 13 | 15 | 14 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m2_e1 | homalt | 60.5657 | 44.8276 | 93.3333 | 84.5361 | 13 | 16 | 14 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m0_e0 | * | 74.0741 | 66.6667 | 83.3333 | 98.0831 | 4 | 2 | 5 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m0_e0 | het | 77.4194 | 75.0000 | 80.0000 | 98.1884 | 3 | 1 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_siren | homalt | 57.7796 | 43.0769 | 87.7193 | 72.0588 | 56 | 74 | 50 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | segdup | homalt | 68.9215 | 54.0000 | 95.2381 | 87.5000 | 27 | 23 | 20 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | HG002compoundhet | homalt | 0.0000 | 0.0000 | 66.6667 | 0 | 3 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-snapvard | INDEL | I16_PLUS | func_cds | * | 0.0000 | 0.0000 | 60.0000 | 61.5385 | 0 | 12 | 3 | 2 | 2 | 100.0000 | |