PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85551-85600 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 76.1905 | 80.0000 | 72.7273 | 99.5621 | 8 | 2 | 8 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 66.6667 | 66.6667 | 66.6667 | 97.8417 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 80.0000 | 100.0000 | 66.6667 | 97.3684 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 78.4993 | 76.1905 | 80.9524 | 99.9062 | 16 | 5 | 17 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | * | tech_badpromoters | * | 74.4828 | 71.0526 | 78.2609 | 53.6913 | 54 | 22 | 54 | 15 | 15 | 100.0000 | |
| jpowers-varprowl | INDEL | * | tech_badpromoters | het | 74.4186 | 82.0513 | 68.0851 | 50.5263 | 32 | 7 | 32 | 15 | 15 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 77.2179 | 65.3061 | 94.4444 | 25.0000 | 32 | 17 | 17 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 73.4694 | 64.2857 | 85.7143 | 95.1389 | 9 | 5 | 6 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 74.6404 | 61.7021 | 94.4444 | 94.7674 | 29 | 18 | 17 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 75.3138 | 62.5000 | 94.7368 | 94.7368 | 30 | 18 | 18 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 72.5806 | 58.8235 | 94.7368 | 94.8087 | 30 | 21 | 18 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m0_e0 | homalt | 97.0553 | 96.4706 | 97.6471 | 94.1661 | 82 | 3 | 83 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | tech_badpromoters | * | 91.8919 | 89.4737 | 94.4444 | 57.1429 | 17 | 2 | 17 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | tech_badpromoters | homalt | 94.7368 | 100.0000 | 90.0000 | 47.3684 | 9 | 0 | 9 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | func_cds | * | 82.0513 | 74.4186 | 91.4286 | 43.5484 | 32 | 11 | 32 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | func_cds | het | 83.8269 | 79.3103 | 88.8889 | 40.0000 | 23 | 6 | 24 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 59.7902 | 69.7674 | 52.3096 | 34.3980 | 420 | 182 | 419 | 382 | 382 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 79.1493 | 72.0787 | 87.7579 | 53.3974 | 4910 | 1902 | 638 | 89 | 89 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 57.9710 | 51.2821 | 66.6667 | 62.5000 | 20 | 19 | 4 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 57.1429 | 46.5116 | 74.0741 | 65.8228 | 20 | 23 | 20 | 7 | 7 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 53.1306 | 49.0909 | 57.8947 | 66.0714 | 27 | 28 | 11 | 8 | 8 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 51.0251 | 48.4848 | 53.8462 | 69.0476 | 16 | 17 | 7 | 6 | 6 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 58.9966 | 69.7941 | 51.0924 | 33.9623 | 305 | 132 | 304 | 291 | 291 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 83.1109 | 76.3884 | 91.1308 | 38.7228 | 4154 | 1284 | 411 | 40 | 40 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 81.1499 | 74.3504 | 89.3182 | 33.8346 | 3548 | 1224 | 393 | 47 | 47 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 50.0921 | 84.4720 | 35.6021 | 27.7883 | 136 | 25 | 136 | 246 | 246 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 86.5961 | 80.0752 | 94.2731 | 78.2359 | 213 | 53 | 214 | 13 | 13 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 88.1961 | 82.5806 | 94.6309 | 78.0882 | 128 | 27 | 141 | 8 | 8 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 69.4006 | 59.4595 | 83.3333 | 67.5676 | 22 | 15 | 10 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 90.0000 | 85.1351 | 95.4545 | 79.7546 | 63 | 11 | 63 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 61.1189 | 45.6140 | 92.5926 | 99.6543 | 26 | 31 | 25 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 66.6667 | 66.6667 | 66.6667 | 99.8717 | 4 | 2 | 4 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 71.4799 | 62.8596 | 82.8402 | 34.4961 | 743 | 439 | 140 | 29 | 29 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 83.0586 | 77.6471 | 89.2809 | 34.5471 | 660 | 190 | 658 | 79 | 79 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 51.6683 | 38.0989 | 80.2508 | 24.4970 | 501 | 814 | 512 | 126 | 126 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 43.0800 | 29.0909 | 82.9861 | 28.5360 | 96 | 234 | 239 | 49 | 49 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 50.2318 | 34.6784 | 91.0828 | 15.1351 | 275 | 518 | 143 | 14 | 14 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 67.5325 | 67.7083 | 67.3575 | 24.9027 | 130 | 62 | 130 | 63 | 63 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 85.9762 | 77.6671 | 96.2761 | 24.1736 | 546 | 157 | 1060 | 41 | 41 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 85.2592 | 83.7329 | 86.8421 | 25.4902 | 489 | 95 | 66 | 10 | 10 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 64.3676 | 52.1127 | 84.1584 | 21.7054 | 74 | 68 | 85 | 16 | 16 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 38.8186 | 25.0000 | 86.7925 | 22.0588 | 6 | 18 | 46 | 7 | 7 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 66.7366 | 54.6392 | 85.7143 | 3.4483 | 53 | 44 | 24 | 4 | 4 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 73.1707 | 71.4286 | 75.0000 | 37.5000 | 15 | 6 | 15 | 5 | 5 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m0_e0 | * | 80.2812 | 68.9320 | 96.1039 | 84.6307 | 71 | 32 | 74 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m0_e0 | het | 85.0633 | 75.0000 | 98.2456 | 77.4704 | 45 | 15 | 56 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m0_e0 | homalt | 79.0698 | 70.8333 | 89.4737 | 91.9831 | 17 | 7 | 17 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 60.2673 | 45.5882 | 88.8889 | 73.5294 | 31 | 37 | 8 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m1_e0 | homalt | 81.7391 | 73.4375 | 92.1569 | 88.6414 | 47 | 17 | 47 | 4 | 4 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 60.2673 | 45.5882 | 88.8889 | 73.5294 | 31 | 37 | 8 | 1 | 1 | 100.0000 | |