PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
85351-85400 / 86044 show all
jli-customSNPtimap_l125_m1_e0homalt
99.7551
99.5835
99.9273
62.3216
10999461099988
100.0000
jli-customSNPtimap_l125_m2_e0homalt
99.7530
99.5774
99.9293
65.1271
11310481131088
100.0000
jli-customSNPtimap_l125_m2_e1homalt
99.7552
99.5811
99.9299
65.1529
11410481141088
100.0000
jli-customSNPtimap_l150_m0_e0homalt
99.6006
99.3481
99.8544
71.0140
274318274344
100.0000
jli-customSNPtimap_l150_m1_e0homalt
99.7128
99.5087
99.9178
67.3088
729136729166
100.0000
jli-customSNPtimap_l150_m2_e0homalt
99.7105
99.5011
99.9209
69.8737
757838757866
100.0000
jli-customSNPtimap_l150_m2_e1homalt
99.7134
99.5060
99.9217
69.9097
765538765566
100.0000
jli-customSNPtimap_l250_m0_e0homalt
99.1945
98.8532
99.5381
89.7296
431543122
100.0000
jli-customSNPtimap_l250_m1_e0homalt
99.3746
98.8799
99.8743
84.2895
158918158922
100.0000
jli-customSNPtimap_l250_m2_e0homalt
99.4256
98.9708
99.8846
85.5643
173118173122
100.0000
jli-customSNPtimap_l250_m2_e1homalt
99.4331
98.9842
99.8861
85.6066
175418175422
100.0000
jli-customSNPtimap_sirenhetalt
98.2456
98.2456
98.2456
70.4663
5615611
100.0000
jli-customSNPtimap_sirenhomalt
99.8561
99.7521
99.9604
48.6440
3782294378191515
100.0000
jli-customSNPtisegduphomalt
99.9200
99.8934
99.9467
87.3710
74978749744
100.0000
jli-customSNPtitech_badpromoters*
98.8235
98.8235
98.8235
44.4444
8418411
100.0000
jli-customSNPtitech_badpromotershomalt
98.7952
100.0000
97.6190
41.6667
4104111
100.0000
jli-customSNPtv*hetalt
99.8277
99.7704
99.8851
43.3225
869286911
100.0000
jli-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.8912
99.8550
99.9274
36.4538
27544275422
100.0000
jli-customSNPtvmap_l100_m0_e0hetalt
96.9697
100.0000
94.1176
71.1864
1601611
100.0000
jli-customSNPtvmap_l100_m0_e0homalt
99.6481
99.4020
99.8955
59.7962
382323382344
100.0000
jli-customSNPtvmap_l100_m1_e0hetalt
98.7952
100.0000
97.6190
72.5490
4104111
100.0000
jli-customSNPtvmap_l100_m2_e0hetalt
98.8235
100.0000
97.6744
75.2874
4204211
100.0000
jli-customSNPtvmap_l100_m2_e1hetalt
98.8506
100.0000
97.7273
74.8571
4304311
100.0000
jli-customSNPtvmap_l125_m0_e0homalt
99.5485
99.2796
99.8189
66.7820
220516220544
100.0000
jli-customSNPtvmap_l150_m0_e0homalt
99.5851
99.3976
99.7732
73.0220
13208132033
100.0000
jli-customSNPtvmap_l150_m1_e0homalt
99.6698
99.4425
99.8982
67.6388
392422392444
100.0000
jli-customSNPtvmap_l150_m2_e0homalt
99.6809
99.4612
99.9016
70.2372
406122406144
100.0000
jli-customSNPtvmap_l150_m2_e1homalt
99.6848
99.4678
99.9028
70.2106
411222411244
100.0000
jli-customSNPtvmap_l250_m0_e0homalt
98.4456
98.4456
98.4456
91.2153
190319033
100.0000
jli-customSNPtvmap_l250_m1_e0homalt
99.2974
99.0654
99.5305
84.1518
848884844
100.0000
jli-customSNPtvmap_l250_m2_e0homalt
99.3044
99.0395
99.5708
85.4375
928992844
100.0000
jli-customSNPtvmap_l250_m2_e1homalt
99.3111
99.0486
99.5749
85.5298
937993744
100.0000
jli-customSNPtvmap_sirenhetalt
98.7654
98.7654
98.7654
71.5789
8018011
100.0000
jli-customSNPtvmap_sirenhomalt
99.8403
99.7332
99.9477
52.3546
17194461719199
100.0000
jli-customSNPtvsegduphomalt
99.8611
99.9074
99.8149
89.3818
32353323566
100.0000
jli-customSNPtvtech_badpromoters*
97.9021
97.2222
98.5915
52.9801
7027011
100.0000
jli-customSNPtvtech_badpromotershomalt
97.4359
97.4359
97.4359
51.2500
3813811
100.0000
jmaeng-gatkINDEL*HG002complexvarhetalt
91.1572
85.1041
98.1374
66.7119
314855133726464
100.0000
jmaeng-gatkINDEL*HG002compoundhethetalt
95.3319
91.2708
99.7711
50.5352
229822198230985353
100.0000
jmaeng-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
92.3401
86.1140
99.5366
37.1153
329353134371616
100.0000
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
95.8097
92.2658
99.6368
36.6287
154131292156355757
100.0000
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
94.1217
89.2704
99.5305
73.3750
2082521211
100.0000
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.8830
99.8129
99.9531
76.9081
21344213211
100.0000
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
94.4506
90.1515
99.1803
77.1107
1191312111
100.0000
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.0778
85.6776
99.5114
35.1466
233339024441212
100.0000
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
95.8671
92.3787
99.6294
28.3565
127151049129034848
100.0000
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.7386
93.9847
99.6588
27.1170
10437668105163636
100.0000
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
95.8065
92.2605
99.6360
30.7769
129461086131394848
100.0000
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
95.8097
92.2658
99.6368
36.6287
154131292156355757
100.0000
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
96.1719
93.0119
99.5542
28.6148
974373298254444
100.0000