PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
84501-84550 / 86044 show all
ltrigg-rtg2INDELC16_PLUSmap_l100_m2_e0*
0.0000
0.0000
96.8750
00011
100.0000
ltrigg-rtg2INDELC16_PLUSmap_l100_m2_e0het
0.0000
0.0000
93.7500
00011
100.0000
ltrigg-rtg2INDELC16_PLUSmap_l100_m2_e1*
0.0000
0.0000
96.9697
00011
100.0000
ltrigg-rtg2INDELC16_PLUSmap_l100_m2_e1het
0.0000
0.0000
94.1176
00011
100.0000
ltrigg-rtg2INDELC16_PLUSmap_siren*
0.0000
0.0000
98.4375
00011
100.0000
ltrigg-rtg2INDELC16_PLUSmap_sirenhet
0.0000
0.0000
97.0588
00011
100.0000
ltrigg-rtg2INDELC1_5*hetalt
99.4614
100.0000
98.9286
95.9296
1027733
100.0000
ltrigg-rtg2INDELC1_5HG002complexvarhetalt
0.0000
0.0000
99.6350
86.5818
0027311
100.0000
ltrigg-rtg2INDELC1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
87.5000
96.6387
00711
100.0000
ltrigg-rtg2INDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
0.0000
97.9592
95.9184
009622
100.0000
ltrigg-rtg2INDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.0000
97.9592
95.9184
009622
100.0000
ltrigg-rtg2INDELC1_5lowcmp_SimpleRepeat_quadTR_51to200*
0.0000
0.0000
60.0000
95.2830
00322
100.0000
ltrigg-rtg2INDELC1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
50.0000
96.8254
00111
100.0000
ltrigg-rtg2INDELC1_5lowcmp_SimpleRepeat_quadTR_51to200homalt
0.0000
0.0000
88.8889
00011
100.0000
ltrigg-rtg2INDELC1_5map_sirenhetalt
0.0000
0.0000
85.7143
97.2973
00611
100.0000
ltrigg-rtg2INDELC6_15*homalt
0.0000
0.0000
98.1818
96.0630
005411
100.0000
ltrigg-rtg2INDELC6_15HG002complexvarhomalt
0.0000
0.0000
98.1132
91.5335
005211
100.0000
ltrigg-rtg2INDELC6_15HG002compoundhethetalt
0.0000
0.0000
99.1935
85.6978
0012311
100.0000
ltrigg-rtg2INDELC6_15HG002compoundhethomalt
0.0000
0.0000
95.2381
00011
100.0000
ltrigg-rtg2INDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
0.0000
0.0000
90.0000
97.6077
00911
100.0000
ltrigg-rtg2INDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
75.0000
98.1982
00311
100.0000
ltrigg-rtg2INDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
0.0000
0.0000
98.9362
96.0801
009311
100.0000
ltrigg-rtg2INDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
0.0000
97.9167
95.8478
004711
100.0000
ltrigg-rtg2INDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
0.0000
98.1132
95.6414
005211
100.0000
ltrigg-rtg2INDELC6_15lowcmp_SimpleRepeat_diTR_51to200*
0.0000
0.0000
66.6667
98.0263
00211
100.0000
ltrigg-rtg2INDELC6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
50.0000
97.7528
00111
100.0000
ltrigg-rtg2INDELD16_PLUS*hetalt
95.7476
92.6539
99.0550
39.6309
179114217821717
100.0000
ltrigg-rtg2INDELD16_PLUS*homalt
97.3031
94.9173
99.8119
53.8350
160686159233
100.0000
ltrigg-rtg2INDELD16_PLUSHG002complexvarhetalt
90.0287
86.6397
93.6937
56.8932
214332081414
100.0000
ltrigg-rtg2INDELD16_PLUSHG002complexvarhomalt
96.9739
94.4637
99.6212
60.8309
2731626311
100.0000
ltrigg-rtg2INDELD16_PLUSHG002compoundhet*
95.5047
92.1828
99.0749
28.5997
215818321422020
100.0000
ltrigg-rtg2INDELD16_PLUSHG002compoundhethet
93.5628
89.3827
98.1530
48.0110
3624337277
100.0000
ltrigg-rtg2INDELD16_PLUSHG002compoundhethetalt
95.9722
92.7905
99.3799
22.0220
178913917631111
100.0000
ltrigg-rtg2INDELD16_PLUSHG002compoundhethomalt
82.3529
87.5000
77.7778
62.5000
71722
100.0000
ltrigg-rtg2INDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
92.8797
87.6923
98.7194
39.9301
8551208481111
100.0000
ltrigg-rtg2INDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
93.4888
88.3197
99.3007
60.7143
4315742633
100.0000
ltrigg-rtg2INDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.6427
96.1360
99.1974
40.4967
12445012361010
100.0000
ltrigg-rtg2INDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.7599
95.7237
99.8847
53.2615
8733986611
100.0000
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
95.7426
92.6463
99.0529
39.5216
178914217781717
100.0000
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
96.3994
93.2746
99.7407
59.0297
116584115433
100.0000
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
95.1497
91.2791
99.3631
71.2980
1571515611
100.0000
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
98.7409
97.7839
99.7167
56.1491
353835211
100.0000
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
91.7092
86.1153
98.0803
52.6837
113518311242222
100.0000
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
90.5486
84.8066
97.1246
70.0192
3075530499
100.0000
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.2310
86.9440
98.2026
35.7143
606916011111
100.0000
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
91.9203
85.7143
99.0950
48.1221
2223721922
100.0000
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
95.5306
92.3053
98.9896
52.2438
296324729393030
100.0000
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
94.8398
91.3242
98.6369
70.6759
800767961111
100.0000
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
95.7537
92.8262
98.8719
34.2209
150111614901717
100.0000
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
95.8706
92.3291
99.6947
44.2078
6625565322
100.0000