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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1678 1679 1680 1681 1682 1683 1684 1685 1686 ... 1720 1721 » 84051-84100 / 86044 show all
ckim-vqsr	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	93.9827	89.0533	99.4898	29.9773	2107	259	2145	11	11	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.7063	95.9630	99.5141	33.0555	6537	275	6554	32	32	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.8550	94.3417	99.5058	29.2966	7603	456	7651	38	38	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.8506	100.0000	97.7273	77.7778	43	0	43	1	1	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7394	99.6528	99.8261	70.1454	574	2	574	1	1	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	95.3442	92.7273	98.1132	61.5942	51	4	52	1	1	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8974	100.0000	99.7951	68.0419	487	0	487	1	1	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	92.1122	87.8788	96.7742	62.1951	29	4	30	1	1	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	93.4541	88.1148	99.4822	29.4843	1505	203	1537	8	8	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	92.7350	99.3135	86.9739	48.6097	434	3	434	65	65	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.8082	94.2070	99.5571	26.7517	6700	412	6744	30	30	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.8202	96.1199	99.5818	26.2339	5227	211	5239	22	22	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.7996	94.1873	99.5608	27.3684	6757	417	6801	30	30	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.8550	94.3417	99.5058	29.2966	7603	456	7651	38	38	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	97.4580	95.5784	99.4130	24.4663	4561	211	4573	27	27	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	hetalt	88.0242	78.7844	99.7191	26.2176	687	185	710	2	2	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	homalt	83.9050	98.7578	72.9358	36.8116	159	2	159	59	59	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4350	99.2481	99.6226	83.0346	264	2	264	1	1	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	95.8904	94.5946	97.2222	60.8696	35	2	35	1	1	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.6785	97.8849	99.4850	27.6398	1157	25	1159	6	6	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7650	99.8824	99.6479	51.2307	849	1	849	3	3	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	97.2401	95.3342	99.2238	23.4653	756	37	767	6	6	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.5654	99.3064	99.8258	36.8073	1718	12	1719	3	3	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.6436	99.4310	99.8571	47.4080	699	4	699	1	1	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.6618	99.7743	99.5495	35.0877	442	1	442	2	2	100.0000
ckim-vqsr	INDEL	D6_15	segdup	homalt	96.1538	100.0000	92.5926	92.3944	50	0	50	4	4	100.0000
ckim-vqsr	INDEL	I16_PLUS	HG002complexvar	*	98.2632	97.2498	99.2980	66.9502	1273	36	1273	9	9	100.0000
ckim-vqsr	INDEL	I16_PLUS	HG002complexvar	hetalt	96.6468	94.0299	99.4135	66.8932	315	20	339	2	2	100.0000
ckim-vqsr	INDEL	I16_PLUS	HG002complexvar	homalt	98.8800	100.0000	97.7848	70.4673	309	0	309	7	7	100.0000
ckim-vqsr	INDEL	I16_PLUS	HG002compoundhet	*	94.1794	92.1139	96.3397	52.0365	1974	169	1974	75	75	100.0000
ckim-vqsr	INDEL	I16_PLUS	HG002compoundhet	het	85.1501	95.7447	76.6667	93.8017	45	2	23	7	7	100.0000
ckim-vqsr	INDEL	I16_PLUS	HG002compoundhet	hetalt	95.7976	92.0210	99.8974	44.8061	1926	167	1948	2	2	100.0000
ckim-vqsr	INDEL	I16_PLUS	HG002compoundhet	homalt	8.3333	100.0000	4.3478	72.9412	3	0	3	66	66	100.0000
ckim-vqsr	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	96.1538	100.0000	92.5926	92.7224	25	0	25	2	2	100.0000
ckim-vqsr	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.2821	93.1389	99.6448	63.2266	543	40	561	2	2	100.0000
ckim-vqsr	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	95.6522	99.1803	92.3664	87.2444	121	1	121	10	10	100.0000
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.3190	93.1715	99.6865	67.9236	614	45	636	2	2	100.0000
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	92.1212	87.3563	97.4359	84.8544	76	11	76	2	2	100.0000
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	50.0000	100.0000	33.3333	95.0820	1	0	1	2	2	100.0000
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	94.4009	91.5493	97.4359	75.4588	455	42	456	12	12	100.0000
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	94.4079	91.7293	97.2477	87.7940	122	11	106	3	3	100.0000
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	94.9615	90.9091	99.3921	56.0160	310	31	327	2	2	100.0000
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	86.7925	100.0000	76.6667	88.7218	23	0	23	7	7	100.0000
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	94.6645	92.0290	97.4555	73.3740	381	33	383	10	10	100.0000
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	93.9997	91.5094	96.6292	86.9883	97	9	86	3	3	100.0000
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	95.2891	91.6084	99.2780	52.0761	262	24	275	2	2	100.0000
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	89.7959	100.0000	81.4815	87.3832	22	0	22	5	5	100.0000
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	94.9242	90.7895	99.4536	60.9392	345	35	364	2	2	100.0000
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	94.5736	100.0000	89.7059	91.4033	61	0	61	7	7	100.0000
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.3190	93.1715	99.6865	67.9236	614	45	636	2	2	100.0000

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