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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1676 1677 1678 1679 1680 1681 1682 1683 1684 ... 1720 1721 » 83951-84000 / 86044 show all
ckim-isaac	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	96.9007	94.0899	99.8846	27.3413	2595	163	2596	3	3	100.0000
ckim-isaac	SNP	tv	map_l100_m1_e0	homalt	68.8845	52.5489	99.9579	57.4205	4752	4291	4752	2	2	100.0000
ckim-isaac	SNP	tv	map_l100_m2_e0	homalt	69.2951	53.0280	99.9591	61.2002	4886	4328	4886	2	2	100.0000
ckim-isaac	SNP	tv	map_l100_m2_e1	homalt	69.3075	53.0424	99.9595	61.1858	4934	4368	4934	2	2	100.0000
ckim-isaac	SNP	tv	map_l125_m1_e0	homalt	62.9734	45.9727	99.9258	63.6902	2694	3166	2694	2	2	100.0000
ckim-isaac	SNP	tv	map_l125_m2_e0	homalt	63.4373	46.4683	99.9285	67.7501	2796	3221	2796	2	2	100.0000
ckim-isaac	SNP	tv	map_l125_m2_e1	homalt	63.5067	46.5426	99.9293	67.7423	2827	3247	2827	2	2	100.0000
ckim-isaac	SNP	tv	map_l150_m1_e0	homalt	59.4623	42.3213	99.9402	68.6492	1670	2276	1670	1	1	100.0000
ckim-isaac	SNP	tv	map_l150_m2_e0	homalt	59.9931	42.8606	99.9429	72.5764	1750	2333	1750	1	1	100.0000
ckim-isaac	SNP	tv	map_l150_m2_e1	homalt	60.1387	43.0092	99.9438	72.5081	1778	2356	1778	1	1	100.0000
ckim-isaac	SNP	tv	map_siren	homalt	77.1855	62.8654	99.9539	50.4637	10838	6402	10838	5	5	100.0000
ckim-isaac	SNP	tv	segdup	homalt	97.8395	95.7999	99.9678	86.9397	3102	136	3102	1	1	100.0000
ckim-vqsr	INDEL	*	HG002complexvar	hetalt	91.5318	85.7259	98.1813	66.4504	3171	528	3401	63	63	100.0000
ckim-vqsr	INDEL	*	HG002compoundhet	hetalt	95.5428	91.6720	99.7550	50.3140	23083	2097	23206	57	57	100.0000
ckim-vqsr	INDEL	*	func_cds	homalt	99.7792	100.0000	99.5595	39.4667	226	0	226	1	1	100.0000
ckim-vqsr	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	93.2704	87.7615	99.5173	36.9269	3356	468	3505	17	17	100.0000
ckim-vqsr	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.3917	93.3580	99.6293	58.1709	14393	1024	14513	54	54	100.0000
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.1302	92.8764	99.6203	36.5800	15515	1190	15743	60	60	100.0000
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.8475	99.4543	98.2480	73.3285	729	4	729	13	13	100.0000
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	94.8354	90.5579	99.5370	73.1009	211	22	215	1	1	100.0000
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	95.2817	91.6667	99.1935	77.0370	121	11	123	1	1	100.0000
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	92.9687	87.2567	99.4808	35.1295	2376	347	2491	13	13	100.0000
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.1462	92.9163	99.6087	28.2901	12789	975	12983	51	51	100.0000
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	96.8827	94.2729	99.6411	27.0328	10469	636	10551	38	38	100.0000
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.0845	92.7950	99.6157	30.7178	13021	1011	13220	51	51	100.0000
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.1302	92.8764	99.6203	36.5800	15515	1190	15743	60	60	100.0000
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	hetalt	96.2751	93.2220	99.5351	28.3303	9765	710	9848	46	46	100.0000
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	hetalt	87.5183	78.0351	99.6251	29.7101	977	275	1063	4	4	100.0000
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	92.7242	86.9159	99.3644	71.0961	465	70	469	3	3	100.0000
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	97.1896	94.7427	99.7662	39.0209	2541	141	2560	6	6	100.0000
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	96.7955	94.3933	99.3232	30.5115	1128	67	1174	8	8	100.0000
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	hetalt	98.4617	97.0748	99.8889	26.7101	896	27	899	1	1	100.0000
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8839	99.9535	99.8144	47.5030	2151	1	2151	4	4	100.0000
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	homalt	97.9167	100.0000	95.9184	54.6296	47	0	47	2	2	100.0000
ckim-vqsr	INDEL	*	map_l150_m0_e0	homalt	99.0881	99.3902	98.7879	91.7376	163	1	163	2	2	100.0000
ckim-vqsr	INDEL	*	map_l250_m0_e0	homalt	96.0000	96.0000	96.0000	97.7085	24	1	24	1	1	100.0000
ckim-vqsr	INDEL	*	map_l250_m1_e0	homalt	98.6175	98.1651	99.0741	95.2880	107	2	107	1	1	100.0000
ckim-vqsr	INDEL	*	map_l250_m2_e0	homalt	98.6900	98.2609	99.1228	95.6900	113	2	113	1	1	100.0000
ckim-vqsr	INDEL	*	map_l250_m2_e1	homalt	98.7013	98.2759	99.1304	95.7549	114	2	114	1	1	100.0000
ckim-vqsr	INDEL	D16_PLUS	*	hetalt	96.6957	94.2059	99.3207	38.1824	1821	112	2047	14	14	100.0000
ckim-vqsr	INDEL	D16_PLUS	HG002complexvar	hetalt	93.2896	89.8785	96.9697	47.4403	222	25	448	14	14	100.0000
ckim-vqsr	INDEL	D16_PLUS	HG002compoundhet	hetalt	96.8969	94.3465	99.5891	25.8850	1819	109	1939	8	8	100.0000
ckim-vqsr	INDEL	D16_PLUS	HG002compoundhet	homalt	44.4444	100.0000	28.5714	72.5490	8	0	8	20	20	100.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	95.2725	91.6923	99.1437	39.7362	894	81	1042	9	9	100.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.8234	96.2133	99.4883	36.4312	1245	49	1361	7	7	100.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.7195	94.2517	99.3201	38.1124	1820	111	2045	14	14	100.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7101	100.0000	99.4220	81.3578	172	0	172	1	1	100.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	94.7052	90.8178	98.9404	37.4482	633	64	747	8	8	100.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.5196	93.9394	99.2455	33.2429	1519	98	1710	13	13	100.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.8135	96.1864	99.4965	31.6116	908	36	988	5	5	100.0000

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