PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
83801-83850 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.0769 | 98.0769 | 98.0769 | 77.7778 | 51 | 1 | 51 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 81.2500 | 86.6667 | 76.4706 | 96.2637 | 13 | 2 | 13 | 4 | 4 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 94.0594 | 93.1373 | 95.0000 | 59.1837 | 95 | 7 | 95 | 5 | 5 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 54.9313 | 39.2157 | 91.6667 | 45.4545 | 20 | 31 | 11 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 74.6988 | 67.3913 | 83.7838 | 60.6383 | 31 | 15 | 31 | 6 | 6 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 56.6038 | 75.0000 | 45.4545 | 78.4314 | 6 | 2 | 5 | 6 | 6 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 81.4815 | 73.3333 | 91.6667 | 90.9774 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 82.7586 | 75.0000 | 92.3077 | 91.1565 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 82.7586 | 75.0000 | 92.3077 | 91.2162 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_siren | homalt | 85.2459 | 76.4706 | 96.2963 | 87.8378 | 26 | 8 | 26 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | segdup | homalt | 96.0000 | 100.0000 | 92.3077 | 93.7500 | 12 | 0 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 80.5492 | 69.5652 | 95.6522 | 68.7075 | 48 | 21 | 44 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 88.8662 | 81.0811 | 98.3051 | 81.3291 | 60 | 14 | 58 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.7766 | 98.3740 | 99.1826 | 79.5429 | 363 | 6 | 364 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 73.5572 | 58.5593 | 98.8827 | 38.1693 | 756 | 535 | 708 | 8 | 8 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.9006 | 93.9173 | 97.9695 | 71.5112 | 386 | 25 | 386 | 8 | 8 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 96.1039 | 93.9086 | 98.4043 | 52.4051 | 185 | 12 | 185 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 77.1180 | 63.2035 | 98.8889 | 37.9310 | 292 | 170 | 267 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m0_e0 | homalt | 99.2218 | 98.8372 | 99.6094 | 84.1584 | 255 | 3 | 255 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 82.8962 | 72.3404 | 97.0588 | 92.0188 | 34 | 13 | 33 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 83.3042 | 72.9167 | 97.1429 | 92.3077 | 35 | 13 | 34 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 84.4191 | 74.5098 | 97.3684 | 91.9149 | 38 | 13 | 37 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l125_m0_e0 | homalt | 98.6395 | 97.9730 | 99.3151 | 87.6166 | 145 | 3 | 145 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l125_m1_e0 | homalt | 99.2826 | 99.1404 | 99.4253 | 85.5781 | 346 | 3 | 346 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.3122 | 99.1758 | 99.4490 | 86.4552 | 361 | 3 | 361 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.1914 | 98.9247 | 99.4595 | 86.5160 | 368 | 4 | 368 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m0_e0 | homalt | 97.6190 | 96.4706 | 98.7952 | 90.8691 | 82 | 3 | 82 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m1_e0 | homalt | 98.9011 | 98.6842 | 99.1189 | 87.9767 | 225 | 3 | 225 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m2_e0 | homalt | 98.9648 | 98.7603 | 99.1701 | 88.7331 | 239 | 3 | 239 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.9899 | 98.7903 | 99.1903 | 88.7266 | 245 | 3 | 245 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_siren | hetalt | 87.4083 | 78.5714 | 98.4848 | 91.1409 | 66 | 18 | 65 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | segdup | hetalt | 72.2591 | 57.6923 | 96.6667 | 96.9168 | 30 | 22 | 29 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | tech_badpromoters | * | 94.7368 | 94.7368 | 94.7368 | 45.7143 | 18 | 1 | 18 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | tech_badpromoters | het | 94.1176 | 100.0000 | 88.8889 | 50.0000 | 8 | 0 | 8 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 74.0741 | 66.6667 | 83.3333 | 97.4684 | 4 | 2 | 5 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 90.9091 | 100.0000 | 83.3333 | 96.5517 | 3 | 0 | 5 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 67.5127 | 53.8462 | 90.4762 | 72.7273 | 21 | 18 | 19 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 92.3077 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 90.4762 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 63.1067 | 46.2156 | 99.4565 | 35.5517 | 403 | 469 | 366 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 67.6759 | 54.0541 | 90.4762 | 58.8235 | 20 | 17 | 19 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 68.1056 | 52.0548 | 98.4674 | 26.8908 | 304 | 280 | 257 | 4 | 4 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.9592 | 100.0000 | 96.0000 | 87.9808 | 24 | 0 | 24 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m0_e0 | * | 93.5245 | 91.4894 | 95.6522 | 92.2166 | 43 | 4 | 44 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m0_e0 | het | 96.6628 | 96.5517 | 96.7742 | 92.3077 | 28 | 1 | 30 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m0_e0 | homalt | 96.0000 | 100.0000 | 92.3077 | 91.4474 | 12 | 0 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m1_e0 | homalt | 97.0588 | 97.0588 | 97.0588 | 87.4539 | 33 | 1 | 33 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m2_e0 | homalt | 97.2222 | 97.2222 | 97.2222 | 87.8378 | 35 | 1 | 35 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m2_e1 | homalt | 97.2973 | 97.2973 | 97.2973 | 87.7483 | 36 | 1 | 36 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m0_e0 | * | 90.4232 | 87.5000 | 93.5484 | 93.6214 | 28 | 4 | 29 | 2 | 2 | 100.0000 | |