PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1671 1672 1673 1674 1675 1676 1677 1678 1679 ... 1720 1721 » 83701-83750 / 86044 show all
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.8372	98.8372	98.8372	63.5593	255	3	255	3	3	100.0000
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	97.2603	95.9459	98.6111	81.4433	71	3	71	1	1	100.0000
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7250	99.6337	99.8165	77.9531	544	2	544	1	1	100.0000
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	97.2973	97.2973	97.2973	87.8289	36	1	36	1	1	100.0000
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	94.3538	99.2084	89.9522	60.9346	376	3	376	42	42	100.0000
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	hetalt	83.4621	71.8941	99.4667	29.5113	353	138	373	2	2	100.0000
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	homalt	75.4098	97.1831	61.6071	52.3404	69	2	69	43	43	100.0000
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	98.1559	97.0803	99.2556	71.3982	399	12	400	3	3	100.0000
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9362	99.9607	99.9116	54.3466	10174	4	10174	9	9	100.0000
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	99.1916	98.5934	99.7970	32.9401	1472	21	1475	3	3	100.0000
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9319	100.0000	99.8638	51.2807	3666	0	3666	5	5	100.0000
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt	99.4924	99.4924	99.4924	60.6000	196	1	196	1	1	100.0000
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.6750	99.5671	99.7831	29.8326	460	2	460	1	1	100.0000
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	homalt	92.8571	100.0000	86.6667	58.3333	13	0	13	2	2	100.0000
dgrover-gatk	INDEL	D1_5	map_l100_m0_e0	homalt	99.0291	98.8372	99.2218	84.4337	255	3	255	2	2	100.0000
dgrover-gatk	INDEL	D1_5	map_l100_m1_e0	homalt	99.4073	99.1554	99.6604	83.4225	587	5	587	2	2	100.0000
dgrover-gatk	INDEL	D1_5	map_l100_m2_e0	homalt	99.4258	99.1817	99.6711	84.0629	606	5	606	2	2	100.0000
dgrover-gatk	INDEL	D1_5	map_l100_m2_e1	homalt	99.4341	99.1935	99.6759	84.1347	615	5	615	2	2	100.0000
dgrover-gatk	INDEL	D1_5	map_l125_m0_e0	homalt	98.3051	97.9730	98.6395	87.7704	145	3	145	2	2	100.0000
dgrover-gatk	INDEL	D1_5	map_l125_m1_e0	homalt	99.1379	98.8539	99.4236	85.6730	345	4	345	2	2	100.0000
dgrover-gatk	INDEL	D1_5	map_l125_m2_e0	homalt	99.1736	98.9011	99.4475	86.3961	360	4	360	2	2	100.0000
dgrover-gatk	INDEL	D1_5	map_l125_m2_e1	homalt	99.1914	98.9247	99.4595	86.3921	368	4	368	2	2	100.0000
dgrover-gatk	INDEL	D1_5	map_l150_m0_e0	homalt	98.2249	97.6471	98.8095	90.8795	83	2	83	1	1	100.0000
dgrover-gatk	INDEL	D1_5	map_l150_m1_e0	homalt	98.8962	98.2456	99.5556	87.8837	224	4	224	1	1	100.0000
dgrover-gatk	INDEL	D1_5	map_l150_m2_e0	homalt	98.9605	98.3471	99.5816	88.5151	238	4	238	1	1	100.0000
dgrover-gatk	INDEL	D1_5	map_l150_m2_e1	homalt	98.7854	98.3871	99.1870	88.4507	244	4	244	2	2	100.0000
dgrover-gatk	INDEL	D1_5	map_siren	homalt	99.5720	99.4863	99.6578	81.5178	1162	6	1165	4	4	100.0000
dgrover-gatk	INDEL	D1_5	segdup	homalt	99.7222	100.0000	99.4460	94.5665	359	0	359	2	2	100.0000
dgrover-gatk	INDEL	D6_15	HG002complexvar	homalt	99.4048	100.0000	98.8166	62.8338	1169	0	1169	14	14	100.0000
dgrover-gatk	INDEL	D6_15	HG002compoundhet	homalt	26.9663	100.0000	15.5844	70.3846	24	0	24	130	130	100.0000
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.8506	100.0000	97.7273	77.8894	43	0	43	1	1	100.0000
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7394	99.6528	99.8261	69.1854	574	2	574	1	1	100.0000
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	96.3131	94.5455	98.1481	61.9718	52	3	53	1	1	100.0000
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8974	100.0000	99.7951	67.2263	487	0	487	1	1	100.0000
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	93.7973	90.9091	96.8750	61.9048	30	3	31	1	1	100.0000
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	92.7350	99.3135	86.9739	48.2902	434	3	434	65	65	100.0000
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	97.7832	99.8930	95.7607	54.8681	2801	3	2801	124	124	100.0000
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.7706	100.0000	97.5710	56.3208	2370	0	2370	59	59	100.0000
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	98.3863	99.8976	96.9200	41.5335	1951	2	1951	62	62	100.0000
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	hetalt	88.2389	79.1284	99.7203	27.1152	690	182	713	2	2	100.0000
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	homalt	83.4646	98.7578	72.2727	35.4839	159	2	159	61	61	100.0000
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	97.2973	97.2973	97.2973	62.6263	36	1	36	1	1	100.0000
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.9371	98.3926	99.4876	28.3354	1163	19	1165	6	6	100.0000
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7650	99.8824	99.6479	51.0626	849	1	849	3	3	100.0000
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.7975	99.7110	99.8843	36.2126	1725	5	1726	2	2	100.0000
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7748	100.0000	99.5506	34.4624	443	0	443	2	2	100.0000
dgrover-gatk	INDEL	D6_15	segdup	homalt	96.1538	100.0000	92.5926	92.4051	50	0	50	4	4	100.0000
dgrover-gatk	INDEL	I16_PLUS	*	hetalt	96.2521	92.9933	99.7475	58.1926	1951	147	1975	5	5	100.0000
dgrover-gatk	INDEL	I16_PLUS	HG002complexvar	*	98.9256	98.4721	99.3832	67.6397	1289	20	1289	8	8	100.0000
dgrover-gatk	INDEL	I16_PLUS	HG002complexvar	hetalt	97.8993	96.4179	99.4269	69.1424	323	12	347	2	2	100.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge