PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
83501-83550 / 86044 show all
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
98.0132
97.3684
98.6667
91.5636
148414822
100.0000
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
99.3818
99.2284
99.5356
87.4927
128610128666
100.0000
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
99.4131
99.5300
99.2966
88.5687
847484766
100.0000
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.5922
99.5471
99.6374
86.6820
10995109944
100.0000
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.5839
99.7222
99.4460
87.8981
718271844
100.0000
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7720
99.5863
99.9585
73.0075
240710240711
100.0000
dgrover-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9319
99.9546
99.9092
41.9457
22001220022
100.0000
dgrover-gatkSNPtilowcmp_SimpleRepeat_quadTR_51to200*
93.8776
91.0891
96.8421
93.6242
9299233
100.0000
dgrover-gatkSNPtilowcmp_SimpleRepeat_quadTR_51to200het
94.6565
93.9394
95.3846
93.9024
6246233
100.0000
dgrover-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.9650
100.0000
99.9300
27.1057
14270142711
100.0000
dgrover-gatkSNPtisegduphomalt
99.9067
99.8534
99.9600
87.5169
749411749433
100.0000
dgrover-gatkSNPtitech_badpromoters*
98.8235
98.8235
98.8235
45.5128
8418411
100.0000
dgrover-gatkSNPtitech_badpromotershomalt
98.7952
100.0000
97.6190
42.4658
4104111
100.0000
dgrover-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9009
99.8415
99.9603
61.7282
10081161008144
100.0000
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.8338
99.7050
99.9630
71.6940
540716540722
100.0000
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.4856
99.3676
99.6038
88.3504
12578125755
100.0000
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.4336
99.4962
99.3711
89.5036
790479055
100.0000
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8338
99.7050
99.9630
71.6940
540716540722
100.0000
dgrover-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9357
99.9228
99.9485
59.3897
38843388422
100.0000
dgrover-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.9275
99.9275
99.9275
36.3783
27562275622
100.0000
dgrover-gatkSNPtvsegduphomalt
99.8765
99.9382
99.8149
89.5365
32362323666
100.0000
dgrover-gatkSNPtvtech_badpromoters*
97.9021
97.2222
98.5915
53.8961
7027011
100.0000
dgrover-gatkSNPtvtech_badpromotershomalt
97.4359
97.4359
97.4359
51.8519
3813811
100.0000
egarrison-hhgaINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
84.4720
80.0000
89.4737
99.9555
1641722
100.0000
egarrison-hhgaINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
93.3333
100.0000
87.5000
99.3504
1201422
100.0000
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
87.6827
82.3529
93.7500
99.9619
1431511
100.0000
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
96.0000
100.0000
92.3077
99.4477
1001211
100.0000
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
66.6667
66.6667
66.6667
99.5787
21211
100.0000
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
80.0000
100.0000
66.6667
97.3214
20211
100.0000
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
94.9922
92.1495
98.0159
72.8155
493424941010
100.0000
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_triTR_11to50hetalt
80.0119
67.3889
98.4536
37.0811
62230157399
100.0000
egarrison-hhgaINDEL*map_l150_m0_e0homalt
97.8593
97.5610
98.1595
90.6751
160416033
100.0000
egarrison-hhgaINDEL*segduphetalt
85.5777
75.3846
98.9583
95.4264
98329511
100.0000
egarrison-hhgaINDEL*segduphomalt
99.4792
99.4792
99.4792
93.5414
955595555
100.0000
egarrison-hhgaINDEL*tech_badpromoters*
98.6842
98.6842
98.6842
91.7481
7517511
100.0000
egarrison-hhgaINDEL*tech_badpromotershet
98.7342
100.0000
97.5000
49.3671
3903911
100.0000
ckim-isaacINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
63.1579
54.5455
75.0000
88.2353
651244
100.0000
ckim-isaacINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
83.7989
78.9474
89.2857
81.8182
1542533
100.0000
ckim-isaacINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
80.9122
68.7259
98.3516
52.7273
1788117933
100.0000
ckim-isaacINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
91.1683
84.8517
98.5011
38.5122
8011439201414
100.0000
ckim-isaacINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10het
89.9500
88.4615
91.4894
71.1656
4664344
100.0000
ckim-isaacINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10hetalt
59.5041
44.4444
90.0000
83.0508
45911
100.0000
ckim-isaacINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
76.7173
62.8571
98.4190
46.7368
22013024944
100.0000
ckim-isaacINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200*
75.3247
63.0435
93.5484
55.0725
29172922
100.0000
ckim-isaacINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200het
80.7692
87.5000
75.0000
75.0000
71622
100.0000
ckim-isaacINDELD16_PLUSmap_sirenhomalt
20.5128
11.7647
80.0000
90.1961
430411
100.0000
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
81.5419
72.4638
93.2203
60.1351
50195544
100.0000
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
94.0695
89.1473
99.5671
45.7746
2302823011
100.0000
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
87.1765
82.4324
92.5000
74.6032
61137466
100.0000
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
89.1445
83.7838
95.2381
81.2500
3164022
100.0000