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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1665 1666 1667 1668 1669 1670 1671 1672 1673 ... 1720 1721 » 83401-83450 / 86044 show all
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	38.1941	23.9567	94.1423	64.6972	310	984	450	28	28	100.0000
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	28.2828	18.1818	63.6364	88.8889	2	9	7	4	4	100.0000
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	39.7830	26.3158	81.4815	82.9114	5	14	22	5	5	100.0000
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	67.7648	90.3704	54.2056	47.4847	244	26	232	196	196	100.0000
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	49.2308	33.3333	94.1176	77.0270	4	8	16	1	1	100.0000
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	73.5287	71.5370	75.6345	65.0089	377	150	298	96	96	100.0000
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	37.1836	23.0932	95.3795	55.7018	218	726	289	14	14	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.9387	96.0088	99.9477	63.4628	5701	237	5737	3	3	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5071	99.8869	99.1302	72.8167	3533	4	3533	31	31	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.3638	94.8948	99.9647	39.6673	5595	301	5656	2	2	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.5149	99.5000	97.5490	61.2167	199	1	199	5	5	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7912	100.0000	99.5833	76.0359	478	0	478	2	2	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8557	100.0000	99.7118	79.2588	346	0	346	1	1	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	89.1429	95.1220	83.8710	76.2755	78	4	78	15	15	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	97.0210	94.2544	99.9549	27.4378	4380	267	4433	2	2	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	97.4203	98.9214	95.9641	68.3987	642	7	642	27	27	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.6126	95.3835	99.9483	25.9281	3843	186	3869	2	2	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.6111	99.4746	97.7625	67.1751	568	3	568	13	13	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.9791	94.1744	99.9560	31.2217	4494	278	4547	2	2	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.2368	99.3209	97.1761	73.3746	1170	8	1170	34	34	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.3638	94.8948	99.9647	39.6673	5595	301	5656	2	2	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	97.7295	95.5848	99.9727	30.0745	3637	168	3661	1	1	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5587	100.0000	99.1213	72.9177	564	0	564	5	5	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	hetalt	76.3337	62.0112	99.2593	29.3194	111	68	134	1	1	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	98.3979	97.1519	99.6764	72.8471	307	9	308	1	1	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8968	100.0000	99.7938	64.2462	968	0	968	2	2	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3928	99.9061	98.8848	68.5288	1064	1	1064	12	12	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt	66.6667	100.0000	50.0000	98.3471	1	0	1	1	1	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.6666	99.6190	99.7143	62.5668	1046	4	1047	3	3	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.6807	99.5745	99.7872	69.0789	468	2	469	1	1	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.6269	100.0000	99.2565	66.5423	267	0	267	2	2	100.0000
dgrover-gatk	INDEL	I1_5	map_l150_m0_e0	homalt	98.5294	100.0000	97.1014	89.2188	67	0	67	2	2	100.0000
dgrover-gatk	INDEL	I1_5	map_l250_m0_e0	*	91.3043	87.5000	95.4545	98.3321	21	3	21	1	1	100.0000
dgrover-gatk	INDEL	I1_5	map_l250_m0_e0	homalt	94.7368	100.0000	90.0000	96.9231	9	0	9	1	1	100.0000
dgrover-gatk	INDEL	I1_5	map_l250_m1_e0	homalt	96.6292	97.7273	95.5556	94.3396	43	1	43	2	2	100.0000
dgrover-gatk	INDEL	I1_5	map_l250_m2_e0	homalt	96.7033	97.7778	95.6522	95.0749	44	1	44	2	2	100.0000
dgrover-gatk	INDEL	I1_5	map_l250_m2_e1	homalt	96.7742	97.8261	95.7447	95.1093	45	1	45	2	2	100.0000
dgrover-gatk	INDEL	I1_5	segdup	homalt	99.5772	99.5772	99.5772	92.8776	471	2	471	2	2	100.0000
dgrover-gatk	INDEL	I6_15	*	hetalt	96.6039	93.4744	99.9502	38.7907	7993	558	8034	4	4	100.0000
dgrover-gatk	INDEL	I6_15	HG002complexvar	homalt	98.5378	99.9176	97.1955	55.8074	1213	1	1213	35	35	100.0000
dgrover-gatk	INDEL	I6_15	HG002compoundhet	hetalt	96.6156	93.4637	99.9875	29.8618	7979	558	8020	1	1	100.0000
dgrover-gatk	INDEL	I6_15	func_cds	*	97.6744	97.6744	97.6744	38.5714	42	1	42	1	1	100.0000
dgrover-gatk	INDEL	I6_15	func_cds	homalt	96.7742	100.0000	93.7500	40.7407	15	0	15	1	1	100.0000
dgrover-gatk	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	94.0156	88.8679	99.7963	48.3158	471	59	490	1	1	100.0000
dgrover-gatk	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	92.1875	100.0000	85.5072	76.2069	59	0	59	10	10	100.0000
dgrover-gatk	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.8406	95.8333	99.9338	44.4975	2990	130	3019	2	2	100.0000
dgrover-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.3835	94.9801	99.9116	43.2609	3349	177	3390	3	3	100.0000
dgrover-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	95.0725	92.1348	98.2036	72.7124	164	14	164	3	3	100.0000
dgrover-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	96.0000	100.0000	92.3077	69.0476	36	0	36	3	3	100.0000
dgrover-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4338	99.1525	99.7167	70.3361	351	3	352	1	1	100.0000

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