PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
83251-83300 / 86044 show all
egarrison-hhgaSNP*map_l150_m2_e1homalt
99.7799
99.6449
99.9152
73.3597
1178542117851010
100.0000
egarrison-hhgaSNP*map_l250_m0_e0homalt
99.1221
98.7281
99.5192
91.2532
621862133
100.0000
egarrison-hhgaSNP*map_l250_m1_e0homalt
99.4705
99.1474
99.7957
86.3912
244221244255
100.0000
egarrison-hhgaSNP*map_l250_m2_e0homalt
99.4958
99.1809
99.8127
87.5461
266422266455
100.0000
egarrison-hhgaSNP*map_l250_m2_e1homalt
99.5018
99.1906
99.8149
87.6004
269622269655
100.0000
egarrison-hhgaSNP*map_sirenhetalt
96.2025
93.8272
98.7013
75.7098
7657611
100.0000
egarrison-hhgaSNP*segduphomalt
99.7815
99.8976
99.6657
89.1087
1073211107323636
100.0000
egarrison-hhgaSNPti*hetalt
98.9708
99.1409
98.8014
49.0846
577557777
100.0000
egarrison-hhgaSNPtiHG002complexvarhetalt
98.5507
98.5507
98.5507
42.1788
204320433
100.0000
egarrison-hhgaSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.2210
98.8562
99.5885
62.9799
121014121055
100.0000
egarrison-hhgaSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
92.3077
100.0000
85.7143
81.5789
60611
100.0000
egarrison-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.8670
99.8227
99.9113
54.5565
11262112611
100.0000
egarrison-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
92.6471
91.3043
94.0299
88.5470
6366344
100.0000
egarrison-hhgaSNPtilowcmp_SimpleRepeat_diTR_51to200*
86.6667
81.2500
92.8571
96.5432
1331311
100.0000
egarrison-hhgaSNPtilowcmp_SimpleRepeat_diTR_51to200het
84.2105
80.0000
88.8889
97.0000
82811
100.0000
egarrison-hhgaSNPtilowcmp_SimpleRepeat_quadTR_11to50hetalt
66.6667
100.0000
50.0000
71.4286
10111
100.0000
egarrison-hhgaSNPtimap_l100_m0_e0hetalt
88.8889
85.7143
92.3077
77.1930
1221211
100.0000
egarrison-hhgaSNPtimap_l100_m0_e0homalt
99.8003
99.6656
99.9355
61.1047
774826774855
100.0000
egarrison-hhgaSNPtimap_l100_m1_e0hetalt
94.7368
93.1034
96.4286
76.8595
2722711
100.0000
egarrison-hhgaSNPtimap_l100_m1_e0homalt
99.8579
99.7829
99.9331
60.2302
1792139179211212
100.0000
egarrison-hhgaSNPtimap_l100_m2_e0hetalt
94.9153
93.3333
96.5517
78.9855
2822811
100.0000
egarrison-hhgaSNPtimap_l100_m2_e0homalt
99.8579
99.7870
99.9289
62.7872
1827039182701313
100.0000
egarrison-hhgaSNPtimap_l100_m2_e1hetalt
95.0820
93.5484
96.6667
78.5714
2922911
100.0000
egarrison-hhgaSNPtimap_l100_m2_e1homalt
99.8593
99.7891
99.9296
62.7744
1845539184551313
100.0000
egarrison-hhgaSNPtimap_l125_m0_e0homalt
99.7435
99.5769
99.9106
67.7962
447219447244
100.0000
egarrison-hhgaSNPtimap_l125_m1_e0homalt
99.8187
99.7103
99.9274
66.0474
11013321101388
100.0000
egarrison-hhgaSNPtimap_l125_m2_e0homalt
99.8237
99.7183
99.9294
68.6664
11326321132688
100.0000
egarrison-hhgaSNPtimap_l125_m2_e1homalt
99.8253
99.7207
99.9300
68.7014
11426321142688
100.0000
egarrison-hhgaSNPtimap_l150_m0_e0homalt
99.7098
99.5654
99.8547
73.4497
274912274944
100.0000
egarrison-hhgaSNPtimap_l150_m1_e0homalt
99.7745
99.6451
99.9042
70.8007
730126730177
100.0000
egarrison-hhgaSNPtimap_l150_m2_e0homalt
99.7831
99.6586
99.9079
73.1839
759026759077
100.0000
egarrison-hhgaSNPtimap_l150_m2_e1homalt
99.7853
99.6620
99.9088
73.2343
766726766777
100.0000
egarrison-hhgaSNPtimap_l250_m0_e0homalt
99.1945
98.8532
99.5381
90.7121
431543122
100.0000
egarrison-hhgaSNPtimap_l250_m1_e0homalt
99.5006
99.1910
99.8121
86.3830
159413159433
100.0000
egarrison-hhgaSNPtimap_l250_m2_e0homalt
99.5125
99.1995
99.8274
87.5412
173514173533
100.0000
egarrison-hhgaSNPtimap_l250_m2_e1homalt
99.5188
99.2099
99.8296
87.5758
175814175833
100.0000
egarrison-hhgaSNPtimap_sirenhetalt
95.4955
92.9825
98.1481
75.0000
5345311
100.0000
egarrison-hhgaSNPtisegduphomalt
99.8003
99.9067
99.6942
88.4424
7498774982323
100.0000
egarrison-hhgaSNPtv*hetalt
99.1394
99.1963
99.0826
48.4024
864786488
100.0000
egarrison-hhgaSNPtvHG002complexvarhetalt
98.7097
98.7097
98.7097
42.0561
306430644
100.0000
egarrison-hhgaSNPtvHG002compoundhethetalt
99.5928
99.3039
99.8833
23.6185
856685611
100.0000
egarrison-hhgaSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.2963
100.0000
92.8571
80.2817
1301311
100.0000
egarrison-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
91.5663
92.6829
90.4762
89.2308
3833844
100.0000
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_diTR_51to200*
85.1064
76.9231
95.2381
94.1989
2062011
100.0000
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_diTR_51to200homalt
82.3529
77.7778
87.5000
91.4894
72711
100.0000
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7811
99.6656
99.8969
59.9463
387413387444
100.0000
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_quadTR_11to50hetalt
90.9091
100.0000
83.3333
64.7059
50511
100.0000
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.6549
99.4561
99.8544
38.0748
274315274344
100.0000
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_quadTR_51to200homalt
72.7273
66.6667
80.0000
94.1860
42411
100.0000
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.7240
99.4783
99.9709
35.3959
343218343411
100.0000