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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1660 1661 1662 1663 1664 1665 1666 1667 1668 ... 1720 1721 » 83151-83200 / 86044 show all
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.6289	93.8110	99.6213	24.3430	7594	501	7629	29	29	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.2173	94.9172	99.6315	23.5294	6480	347	6489	24	24	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.6034	93.7599	99.6247	26.3649	7663	510	7699	29	29	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.6722	93.9296	99.5798	30.8791	8727	564	8769	37	37	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	96.8242	94.2928	99.4953	23.7079	6493	393	6506	33	33	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	hetalt	82.7698	70.8758	99.4609	27.5391	348	143	369	2	2	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	homalt	75.4098	97.1831	61.6071	52.7426	69	2	69	43	43	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	95.0580	91.2409	99.2084	70.5288	375	36	376	3	3	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9312	99.9607	99.9018	54.3175	10174	4	10174	10	10	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.4732	97.1869	99.7941	31.3060	1451	42	1454	3	3	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9318	99.9727	99.8910	51.2943	3665	1	3665	4	4	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	97.8966	96.4615	99.3750	22.2357	627	23	636	4	4	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.3478	98.9177	99.7817	27.8740	457	5	457	1	1	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	homalt	96.2963	100.0000	92.8571	60.0000	13	0	13	1	1	100.0000
ckim-gatk	INDEL	D1_5	map_l125_m0_e0	homalt	98.9899	99.3243	98.6577	87.4685	147	1	147	2	2	100.0000
ckim-gatk	INDEL	D1_5	map_l125_m1_e0	homalt	99.2826	99.1404	99.4253	85.7785	346	3	346	2	2	100.0000
ckim-gatk	INDEL	D1_5	map_l125_m2_e0	homalt	99.3122	99.1758	99.4490	86.4855	361	3	361	2	2	100.0000
ckim-gatk	INDEL	D1_5	map_l125_m2_e1	homalt	99.3271	99.1935	99.4609	86.4599	369	3	369	2	2	100.0000
ckim-gatk	INDEL	D1_5	map_l150_m0_e0	homalt	99.4152	100.0000	98.8372	90.7626	85	0	85	1	1	100.0000
ckim-gatk	INDEL	D1_5	map_l150_m1_e0	homalt	99.1189	98.6842	99.5575	88.1053	225	3	225	1	1	100.0000
ckim-gatk	INDEL	D1_5	map_l150_m2_e0	homalt	99.1701	98.7603	99.5833	88.7006	239	3	239	1	1	100.0000
ckim-gatk	INDEL	D1_5	map_l150_m2_e1	homalt	98.9899	98.7903	99.1903	88.6018	245	3	245	2	2	100.0000
ckim-gatk	INDEL	D1_5	segdup	homalt	99.7222	100.0000	99.4460	94.5493	359	0	359	2	2	100.0000
ckim-gatk	INDEL	D6_15	*	hetalt	96.8620	94.3602	99.5001	32.9523	7713	461	7762	39	39	100.0000
ckim-gatk	INDEL	D6_15	HG002complexvar	hetalt	93.7593	91.3129	96.3403	47.3985	925	88	974	37	37	100.0000
ckim-gatk	INDEL	D6_15	HG002compoundhet	hetalt	96.9335	94.4301	99.5733	24.1244	7697	454	7701	33	33	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	93.9827	89.0533	99.4898	29.9773	2107	259	2145	11	11	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.7140	95.9777	99.5142	33.0521	6538	274	6555	32	32	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.8615	94.3541	99.5059	29.2939	7604	455	7652	38	38	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.8506	100.0000	97.7273	77.7778	43	0	43	1	1	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7394	99.6528	99.8261	70.1454	574	2	574	1	1	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	95.3442	92.7273	98.1132	61.5942	51	4	52	1	1	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8974	100.0000	99.7951	68.0419	487	0	487	1	1	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	92.1122	87.8788	96.7742	62.1951	29	4	30	1	1	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	93.4541	88.1148	99.4822	29.4843	1505	203	1537	8	8	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	92.6361	99.3135	86.8000	48.5597	434	3	434	66	66	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.8156	94.2210	99.5572	26.7488	6701	411	6745	30	30	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.8298	96.1383	99.5819	26.2302	5228	210	5240	22	22	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.8070	94.2013	99.5609	27.3655	6758	416	6802	30	30	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.8615	94.3541	99.5059	29.2939	7604	455	7652	38	38	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	97.4690	95.5993	99.4132	24.4623	4562	210	4574	27	27	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	hetalt	88.0242	78.7844	99.7191	26.2176	687	185	710	2	2	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	homalt	83.6842	98.7578	72.6027	36.7052	159	2	159	60	60	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	95.8904	94.5946	97.2222	60.8696	35	2	35	1	1	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.6785	97.8849	99.4850	27.6398	1157	25	1159	6	6	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7650	99.8824	99.6479	51.2307	849	1	849	3	3	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	97.2401	95.3342	99.2238	23.4653	756	37	767	6	6	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.5945	99.3642	99.8259	36.7938	1719	11	1720	3	3	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.7151	99.5733	99.8573	47.3724	700	3	700	1	1	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.6618	99.7743	99.5495	35.0877	442	1	442	2	2	100.0000

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