PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
83051-83100 / 86044 show all | |||||||||||||||
| ckim-dragen | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8713 | 99.8218 | 99.9208 | 48.8376 | 10084 | 18 | 10093 | 8 | 8 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.2963 | 100.0000 | 92.8571 | 87.8261 | 12 | 0 | 13 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.9274 | 98.0496 | 99.8211 | 42.1025 | 1106 | 22 | 1116 | 2 | 2 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.9362 | 96.3801 | 99.5434 | 90.9728 | 213 | 8 | 218 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 98.0107 | 96.7105 | 99.3464 | 91.3803 | 147 | 5 | 152 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.0342 | 98.7654 | 99.3045 | 87.2122 | 1280 | 16 | 1285 | 9 | 9 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.1798 | 99.1774 | 99.1822 | 88.3012 | 844 | 7 | 849 | 7 | 7 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.7514 | 97.9730 | 99.5423 | 84.3201 | 435 | 9 | 435 | 2 | 2 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.1840 | 99.0942 | 99.2740 | 86.3749 | 1094 | 10 | 1094 | 8 | 8 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.3065 | 99.4444 | 99.1690 | 87.5731 | 716 | 4 | 716 | 6 | 6 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.9501 | 98.4334 | 99.4723 | 83.2597 | 377 | 6 | 377 | 2 | 2 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.2515 | 98.6760 | 99.8336 | 71.5436 | 2385 | 32 | 2400 | 4 | 4 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.2963 | 100.0000 | 92.8571 | 87.8261 | 12 | 0 | 13 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.6736 | 99.4668 | 99.8812 | 64.0938 | 1679 | 9 | 1682 | 2 | 2 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.7586 | 75.0000 | 92.3077 | 98.1690 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 77.7778 | 70.0000 | 87.5000 | 98.5102 | 7 | 3 | 7 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8865 | 99.9091 | 99.8638 | 42.0263 | 2199 | 2 | 2200 | 3 | 3 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9373 | 99.9248 | 99.9498 | 33.3890 | 3984 | 3 | 3984 | 2 | 2 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8598 | 99.7898 | 99.9299 | 26.0373 | 1424 | 3 | 1425 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | map_siren | hetalt | 98.2759 | 100.0000 | 96.6102 | 72.1698 | 57 | 0 | 57 | 2 | 2 | 100.0000 | |
| ckim-dragen | SNP | ti | segdup | hetalt | 80.0000 | 100.0000 | 66.6667 | 98.6607 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | segdup | homalt | 99.9000 | 99.8401 | 99.9600 | 86.9440 | 7493 | 12 | 7493 | 3 | 3 | 100.0000 | |
| ckim-dragen | SNP | ti | tech_badpromoters | * | 98.8235 | 98.8235 | 98.8235 | 42.5676 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | tech_badpromoters | homalt | 98.7952 | 100.0000 | 97.6190 | 43.2432 | 41 | 0 | 41 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | tv | HG002complexvar | homalt | 99.9600 | 99.9306 | 99.9895 | 22.9484 | 95045 | 66 | 95148 | 10 | 10 | 100.0000 | |
| ckim-dragen | SNP | tv | HG002compoundhet | homalt | 99.8672 | 99.8819 | 99.8524 | 43.2020 | 3384 | 4 | 3383 | 5 | 5 | 100.0000 | |
| ckim-dragen | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.9158 | 99.8613 | 99.9703 | 61.4918 | 10083 | 14 | 10085 | 3 | 3 | 100.0000 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.9697 | 100.0000 | 94.1176 | 90.5556 | 15 | 0 | 16 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.3976 | 99.2333 | 99.5624 | 89.0421 | 906 | 7 | 910 | 4 | 4 | 100.0000 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.4458 | 99.2885 | 99.6035 | 87.7940 | 1256 | 9 | 1256 | 5 | 5 | 100.0000 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.4322 | 99.2443 | 99.6207 | 88.9340 | 788 | 6 | 788 | 3 | 3 | 100.0000 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.4664 | 99.3603 | 99.5726 | 85.2133 | 466 | 3 | 466 | 2 | 2 | 100.0000 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.9697 | 100.0000 | 94.1176 | 90.5556 | 15 | 0 | 16 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.7450 | 99.6038 | 99.8865 | 61.3427 | 1760 | 7 | 1760 | 2 | 2 | 100.0000 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9743 | 99.9743 | 99.9743 | 59.5233 | 3886 | 1 | 3888 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | tv | segdup | hetalt | 93.3333 | 100.0000 | 87.5000 | 97.7716 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | tv | segdup | homalt | 99.9074 | 99.9691 | 99.8458 | 89.2553 | 3237 | 1 | 3237 | 5 | 5 | 100.0000 | |
| ckim-dragen | SNP | tv | tech_badpromoters | * | 97.1831 | 95.8333 | 98.5714 | 45.3125 | 69 | 3 | 69 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | tv | tech_badpromoters | homalt | 97.4359 | 97.4359 | 97.4359 | 51.2500 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | * | HG002complexvar | hetalt | 91.5474 | 85.7529 | 98.1818 | 66.4439 | 3172 | 527 | 3402 | 63 | 63 | 100.0000 | |
| ckim-gatk | INDEL | * | HG002compoundhet | hetalt | 95.5666 | 91.7156 | 99.7551 | 50.3022 | 23094 | 2086 | 23217 | 57 | 57 | 100.0000 | |
| ckim-gatk | INDEL | * | func_cds | homalt | 99.7792 | 100.0000 | 99.5595 | 39.4667 | 226 | 0 | 226 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.2704 | 87.7615 | 99.5173 | 36.9269 | 3356 | 468 | 3505 | 17 | 17 | 100.0000 | |
| ckim-gatk | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.4056 | 93.3839 | 99.6294 | 58.1642 | 14397 | 1020 | 14517 | 54 | 54 | 100.0000 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.1399 | 92.8943 | 99.6204 | 36.5756 | 15518 | 1187 | 15746 | 60 | 60 | 100.0000 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.8475 | 99.4543 | 98.2480 | 73.3285 | 729 | 4 | 729 | 13 | 13 | 100.0000 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 94.8354 | 90.5579 | 99.5370 | 73.1009 | 211 | 22 | 215 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.2817 | 91.6667 | 99.1935 | 77.0370 | 121 | 11 | 123 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.9687 | 87.2567 | 99.4808 | 35.1295 | 2376 | 347 | 2491 | 13 | 13 | 100.0000 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.1540 | 92.9308 | 99.6088 | 28.2869 | 12791 | 973 | 12985 | 51 | 51 | 100.0000 | |