PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
83001-83050 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 92.9134 | 100.0000 | 86.7647 | 77.6316 | 59 | 0 | 59 | 9 | 9 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.4894 | 95.1923 | 99.9000 | 43.6220 | 2970 | 150 | 2998 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.3094 | 99.6937 | 95.0365 | 73.7548 | 651 | 2 | 651 | 34 | 34 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.0392 | 94.3279 | 99.9110 | 42.3116 | 3326 | 200 | 3366 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.6301 | 100.0000 | 97.2973 | 70.8661 | 36 | 0 | 36 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.4595 | 100.0000 | 98.9247 | 70.5696 | 92 | 0 | 92 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3797 | 99.1736 | 99.5868 | 69.7500 | 240 | 2 | 241 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.2701 | 100.0000 | 98.5507 | 70.7627 | 68 | 0 | 68 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.6860 | 91.4179 | 98.1964 | 63.3358 | 490 | 46 | 490 | 9 | 9 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.5748 | 95.9732 | 99.2308 | 77.4697 | 143 | 6 | 129 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 85.7143 | 100.0000 | 75.0000 | 78.9474 | 24 | 0 | 24 | 8 | 8 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.8891 | 94.9885 | 98.8674 | 52.9255 | 3317 | 175 | 3317 | 38 | 38 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.8351 | 98.1132 | 99.5677 | 73.2460 | 728 | 14 | 691 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.6886 | 93.6983 | 99.8760 | 34.6569 | 2379 | 160 | 2416 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 92.7152 | 99.5261 | 86.7769 | 70.8785 | 210 | 1 | 210 | 32 | 32 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.2521 | 95.5720 | 98.9924 | 51.2038 | 2849 | 132 | 2849 | 29 | 29 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.9917 | 98.3416 | 99.6503 | 72.5659 | 593 | 10 | 570 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.0913 | 94.4749 | 99.8568 | 32.8741 | 2069 | 121 | 2092 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 93.7343 | 99.4681 | 88.6256 | 69.5087 | 187 | 1 | 187 | 24 | 24 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.6831 | 93.6838 | 99.8808 | 36.3590 | 2477 | 167 | 2514 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 94.8012 | 99.6785 | 90.3790 | 71.4642 | 310 | 1 | 310 | 33 | 33 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.0392 | 94.3279 | 99.9110 | 42.3116 | 3326 | 200 | 3366 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.1287 | 94.5229 | 99.8822 | 39.6374 | 1674 | 97 | 1696 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.5300 | 100.0000 | 93.2927 | 78.6736 | 153 | 0 | 153 | 11 | 11 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.2785 | 70.6522 | 98.4848 | 62.0690 | 65 | 27 | 65 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 80.9217 | 68.6747 | 98.4848 | 30.5263 | 57 | 26 | 65 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.3982 | 99.5370 | 97.2851 | 67.4041 | 215 | 1 | 215 | 6 | 6 | 100.0000 | |
| ckim-dragen | SNP | * | HG002complexvar | homalt | 99.9551 | 99.9245 | 99.9858 | 19.8995 | 288356 | 218 | 288565 | 41 | 41 | 100.0000 | |
| ckim-dragen | SNP | * | HG002compoundhet | homalt | 99.8656 | 99.8980 | 99.8332 | 35.0217 | 10771 | 11 | 10771 | 18 | 18 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8935 | 99.8416 | 99.9455 | 56.0535 | 20167 | 32 | 20178 | 11 | 11 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.9697 | 100.0000 | 94.1176 | 90.5556 | 15 | 0 | 16 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.0605 | 98.2598 | 99.8745 | 43.2288 | 1581 | 28 | 1591 | 2 | 2 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.2924 | 99.2063 | 99.3785 | 88.6959 | 1750 | 14 | 1759 | 11 | 11 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.3235 | 99.1976 | 99.4496 | 87.1665 | 2349 | 19 | 2349 | 13 | 13 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.3723 | 99.3395 | 99.4052 | 88.3238 | 1504 | 10 | 1504 | 9 | 9 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.2348 | 98.9437 | 99.5277 | 84.3986 | 843 | 9 | 843 | 4 | 4 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.9697 | 100.0000 | 94.1176 | 90.5556 | 15 | 0 | 16 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.7101 | 99.5369 | 99.8839 | 62.7379 | 3439 | 16 | 3442 | 4 | 4 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 90.1961 | 85.1852 | 95.8333 | 97.7941 | 23 | 4 | 23 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9425 | 99.9507 | 99.9343 | 54.5644 | 6085 | 3 | 6088 | 4 | 4 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9481 | 99.9259 | 99.9703 | 34.6642 | 6740 | 5 | 6740 | 2 | 2 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8538 | 99.7443 | 99.9634 | 29.9590 | 2731 | 7 | 2732 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | * | segdup | hetalt | 93.3333 | 100.0000 | 87.5000 | 97.7716 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | * | segdup | homalt | 99.9022 | 99.8790 | 99.9255 | 87.7402 | 10730 | 13 | 10730 | 8 | 8 | 100.0000 | |
| ckim-dragen | SNP | * | tech_badpromoters | * | 98.0769 | 97.4522 | 98.7097 | 43.8406 | 153 | 4 | 153 | 2 | 2 | 100.0000 | |
| ckim-dragen | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 47.4026 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| ckim-dragen | SNP | ti | * | hetalt | 99.1507 | 99.8282 | 98.4823 | 48.3899 | 581 | 1 | 584 | 9 | 9 | 100.0000 | |
| ckim-dragen | SNP | ti | HG002complexvar | homalt | 99.9527 | 99.9214 | 99.9840 | 18.3095 | 193311 | 152 | 193417 | 31 | 31 | 100.0000 | |
| ckim-dragen | SNP | ti | HG002compoundhet | homalt | 99.8648 | 99.9053 | 99.8243 | 30.4352 | 7387 | 7 | 7388 | 13 | 13 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 98.8879 | 97.9575 | 99.8361 | 58.2906 | 1199 | 25 | 1218 | 2 | 2 | 100.0000 | |