PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
82801-82850 / 86044 show all
cchapple-customINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
98.8506
99.5370
98.1735
65.0160
215121544
100.0000
cchapple-customINDELI6_15map_l100_m1_e0homalt
96.9697
96.9697
96.9697
85.2018
3213211
100.0000
cchapple-customINDELI6_15map_l100_m2_e0homalt
96.9697
96.9697
96.9697
86.8000
3213211
100.0000
cchapple-customINDELI6_15map_l100_m2_e1homalt
96.9697
96.9697
96.9697
86.9565
3213211
100.0000
cchapple-customINDELI6_15map_sirenhomalt
97.7778
97.7778
97.7778
81.3278
8828822
100.0000
cchapple-customSNP*HG002compoundhethomalt
99.5150
99.0818
99.9520
31.0764
10683991041955
100.0000
cchapple-customSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.6843
99.4279
99.9421
53.0723
173810172511
100.0000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.7220
97.5815
99.8894
72.8284
9282390311
100.0000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.8722
97.8873
99.8771
70.5393
8341881311
100.0000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6282
99.2848
99.9740
70.9201
388728383911
100.0000
cchapple-customSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.5931
99.3054
99.8825
45.7630
343124340144
100.0000
cchapple-customSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9481
99.9110
99.9851
30.4766
67396672411
100.0000
cchapple-customSNP*lowcmp_SimpleRepeat_quadTR_51to200homalt
93.6380
90.2439
97.2973
85.9316
3743611
100.0000
cchapple-customSNP*map_l100_m0_e0homalt
98.1150
96.3081
99.9911
57.3704
111914291118811
100.0000
cchapple-customSNP*map_l100_m1_e0homalt
98.7154
97.4707
99.9924
55.8509
263206832631022
100.0000
cchapple-customSNP*map_l100_m2_e0homalt
98.7307
97.5003
99.9925
58.6733
268356882682422
100.0000
cchapple-customSNP*map_l100_m2_e1homalt
98.7359
97.5104
99.9926
58.6714
271046922709322
100.0000
cchapple-customSNP*map_l125_m0_e0homalt
97.7145
95.5453
99.9844
64.7518
6413299641111
100.0000
cchapple-customSNP*map_l125_m1_e0homalt
98.3281
96.7169
99.9939
61.4654
163505551634511
100.0000
cchapple-customSNP*map_l125_m2_e0homalt
98.3473
96.7540
99.9941
64.3980
168115641680611
100.0000
cchapple-customSNP*map_l125_m2_e1homalt
98.3624
96.7830
99.9941
64.4456
169685641696211
100.0000
cchapple-customSNP*map_l150_m0_e0homalt
97.4937
95.1333
99.9743
71.2925
3890199388811
100.0000
cchapple-customSNP*map_l150_m1_e0homalt
98.2123
96.4961
99.9908
66.3750
108783951087411
100.0000
cchapple-customSNP*map_l150_m2_e0homalt
98.2343
96.5382
99.9911
69.1013
112944051129011
100.0000
cchapple-customSNP*map_l150_m2_e1homalt
98.2494
96.5672
99.9912
69.1407
114214061141611
100.0000
cchapple-customSNP*map_l250_m0_e0homalt
97.6442
95.5485
99.8339
90.2320
6012860111
100.0000
cchapple-customSNP*map_l250_m1_e0homalt
98.0976
96.3053
99.9578
83.7177
237291237111
100.0000
cchapple-customSNP*map_l250_m2_e0homalt
98.1039
96.3142
99.9613
85.0046
258799258611
100.0000
cchapple-customSNP*map_l250_m2_e1homalt
98.1075
96.3208
99.9618
85.0801
2618100261711
100.0000
cchapple-customSNP*map_sirenhomalt
99.1241
98.2758
99.9871
48.6990
542059515417377
100.0000
cchapple-customSNP*segduphomalt
99.8463
99.8790
99.8136
87.7694
1073013107102020
100.0000
cchapple-customSNP*tech_badpromotershomalt
98.7421
98.7500
98.7342
44.3662
7917811
100.0000
cchapple-customSNPtiHG002compoundhethomalt
99.5445
99.1480
99.9443
27.6293
733163717344
100.0000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
96.9979
94.5701
99.5536
89.9281
2091222311
100.0000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
97.0005
94.7368
99.3750
91.2807
144815911
100.0000
cchapple-customSNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.4642
99.1114
99.8195
47.8833
167315165933
100.0000
cchapple-customSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9498
99.9248
99.9749
29.7121
39843397811
100.0000
cchapple-customSNPtilowcmp_SimpleRepeat_quadTR_51to200*
93.7853
89.1089
98.9796
92.5362
90119711
100.0000
cchapple-customSNPtilowcmp_SimpleRepeat_quadTR_51to200het
92.8800
87.8788
98.4848
94.0000
5886511
100.0000
cchapple-customSNPtimap_l100_m0_e0homalt
98.0662
96.2182
99.9866
56.4787
7480294747911
100.0000
cchapple-customSNPtimap_l100_m1_e0homalt
98.6915
97.4276
99.9886
54.9898
174984621749322
100.0000
cchapple-customSNPtimap_l100_m2_e0homalt
98.7027
97.4493
99.9888
57.8553
178424671783722
100.0000
cchapple-customSNPtimap_l100_m2_e1homalt
98.7103
97.4640
99.9889
57.8502
180254691802022
100.0000
cchapple-customSNPtimap_l125_m0_e0homalt
97.6182
95.3685
99.9767
63.8992
4283208428211
100.0000
cchapple-customSNPtimap_l125_m1_e0homalt
98.2873
96.6410
99.9906
60.9405
106743711067211
100.0000
cchapple-customSNPtimap_l125_m2_e0homalt
98.3080
96.6808
99.9909
63.9160
109813771097911
100.0000
cchapple-customSNPtimap_l125_m2_e1homalt
98.3230
96.7097
99.9910
63.9684
110813771107811
100.0000
cchapple-customSNPtimap_l150_m0_e0homalt
97.5139
95.1829
99.9619
70.3118
2628133262711
100.0000
cchapple-customSNPtimap_l150_m1_e0homalt
98.1515
96.3832
99.9858
66.0349
7062265706011
100.0000
cchapple-customSNPtimap_l150_m2_e0homalt
98.1821
96.4417
99.9864
68.7543
7345271734311
100.0000