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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
82601-82650 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.6181 | 93.5621 | 99.8804 | 39.4313 | 3299 | 227 | 3340 | 4 | 4 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 94.4606 | 91.0112 | 98.1818 | 72.3618 | 162 | 16 | 162 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.0000 | 100.0000 | 92.3077 | 69.5312 | 36 | 0 | 36 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.0047 | 98.3051 | 99.7143 | 69.9828 | 348 | 6 | 349 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.4595 | 100.0000 | 98.9247 | 70.0000 | 92 | 0 | 92 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.0377 | 88.9807 | 99.7041 | 43.6667 | 323 | 40 | 337 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 88.8889 | 100.0000 | 80.0000 | 79.4521 | 24 | 0 | 24 | 6 | 6 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.3956 | 93.1863 | 99.8338 | 31.7550 | 2366 | 173 | 2403 | 4 | 4 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.7765 | 93.8813 | 99.8559 | 30.0168 | 2056 | 134 | 2079 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.3003 | 93.0030 | 99.8400 | 33.3511 | 2459 | 185 | 2496 | 4 | 4 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.6181 | 93.5621 | 99.8804 | 39.4313 | 3299 | 227 | 3340 | 4 | 4 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 95.9847 | 92.4337 | 99.8195 | 35.5314 | 1637 | 134 | 1659 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 83.4015 | 72.2892 | 98.5507 | 28.8660 | 60 | 23 | 68 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.5392 | 100.0000 | 99.0826 | 67.8940 | 216 | 0 | 216 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l150_m0_e0 | * | 87.5000 | 87.5000 | 87.5000 | 97.4922 | 7 | 1 | 7 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l150_m0_e0 | het | 88.8889 | 100.0000 | 80.0000 | 97.8166 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 99.4253 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| ckim-gatk | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 99.2188 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ckim-gatk | INDEL | I6_15 | map_l250_m1_e0 | * | 76.9231 | 71.4286 | 83.3333 | 98.4496 | 5 | 2 | 5 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l250_m1_e0 | het | 75.0000 | 75.0000 | 75.0000 | 98.5612 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l250_m2_e0 | * | 80.0000 | 75.0000 | 85.7143 | 98.4091 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l250_m2_e0 | het | 80.0000 | 80.0000 | 80.0000 | 98.4326 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l250_m2_e1 | * | 80.0000 | 75.0000 | 85.7143 | 98.4783 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l250_m2_e1 | het | 80.0000 | 80.0000 | 80.0000 | 98.4985 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | * | HG002complexvar | hetalt | 98.0328 | 96.4516 | 99.6667 | 39.8798 | 299 | 11 | 299 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6558 | 99.3707 | 99.9425 | 60.9877 | 1737 | 11 | 1737 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.7942 | 99.6237 | 99.9652 | 56.3615 | 20123 | 76 | 20123 | 7 | 7 | 100.0000 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.5563 | 99.1458 | 99.9703 | 67.1493 | 16830 | 145 | 16830 | 5 | 5 | 100.0000 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.8445 | 99.7514 | 99.9377 | 43.4109 | 1605 | 4 | 1605 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.3658 | 98.8433 | 99.8937 | 85.4985 | 940 | 11 | 940 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.5289 | 99.1784 | 99.8818 | 84.5845 | 845 | 7 | 845 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7697 | 99.5913 | 99.9487 | 76.0057 | 3899 | 16 | 3899 | 2 | 2 | 100.0000 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.5563 | 99.1458 | 99.9703 | 67.1493 | 16830 | 145 | 16830 | 5 | 5 | 100.0000 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.8116 | 99.6527 | 99.9710 | 62.5408 | 3443 | 12 | 3443 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7119 | 99.4908 | 99.9340 | 54.5993 | 6057 | 31 | 6057 | 4 | 4 | 100.0000 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7622 | 99.5982 | 99.9267 | 30.6657 | 2727 | 11 | 2727 | 2 | 2 | 100.0000 | |
| ckim-gatk | SNP | * | map_l100_m1_e0 | hetalt | 78.2609 | 65.8537 | 96.4286 | 89.0625 | 27 | 14 | 27 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | * | map_l100_m2_e0 | hetalt | 78.8732 | 66.6667 | 96.5517 | 90.1024 | 28 | 14 | 28 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | * | map_l100_m2_e1 | hetalt | 79.4521 | 67.4419 | 96.6667 | 89.7959 | 29 | 14 | 29 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | * | map_l150_m0_e0 | homalt | 65.2389 | 48.4226 | 99.9495 | 85.6968 | 1980 | 2109 | 1980 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | * | segdup | homalt | 99.4811 | 99.0505 | 99.9155 | 88.5459 | 10641 | 102 | 10641 | 9 | 9 | 100.0000 | |
| ckim-gatk | SNP | * | tech_badpromoters | * | 98.4026 | 98.0892 | 98.7179 | 49.0196 | 154 | 3 | 154 | 2 | 2 | 100.0000 | |
| ckim-gatk | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 47.0588 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| ckim-gatk | SNP | ti | * | hetalt | 98.5281 | 97.7663 | 99.3019 | 52.5269 | 569 | 13 | 569 | 4 | 4 | 100.0000 | |
| ckim-gatk | SNP | ti | HG002complexvar | hetalt | 97.5369 | 95.6522 | 99.4975 | 39.5137 | 198 | 9 | 198 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | ti | HG002compoundhet | homalt | 99.4702 | 99.0262 | 99.9181 | 30.6914 | 7322 | 72 | 7322 | 6 | 6 | 100.0000 | |
| ckim-gatk | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.5490 | 99.1830 | 99.9177 | 59.4324 | 1214 | 10 | 1214 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8514 | 99.7426 | 99.9603 | 49.3467 | 10076 | 26 | 10076 | 4 | 4 | 100.0000 | |
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.5260 | 99.0651 | 99.9913 | 63.9562 | 11444 | 108 | 11444 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.7781 | 99.6454 | 99.9111 | 42.5727 | 1124 | 4 | 1124 | 1 | 1 | 100.0000 | |