PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
81701-81750 / 86044 show all
astatham-gatkSNPtimap_l150_m0_e0homalt
98.9039
98.0442
99.7788
72.9781
270754270766
100.0000
astatham-gatkSNPtimap_l250_m0_e0homalt
98.2578
97.0183
99.5294
90.9651
4231342322
100.0000
astatham-gatkSNPtimap_l250_m1_e0homalt
98.6465
97.5109
99.8089
85.2776
156740156733
100.0000
astatham-gatkSNPtimap_l250_m2_e0homalt
98.7576
97.7130
99.8248
86.3182
170940170933
100.0000
astatham-gatkSNPtimap_l250_m2_e1homalt
98.7739
97.7427
99.8271
86.3568
173240173233
100.0000
astatham-gatkSNPtisegduphomalt
99.8666
99.7868
99.9466
87.4281
748916748944
100.0000
astatham-gatkSNPtitech_badpromoters*
98.2249
97.6471
98.8095
45.0980
8328311
100.0000
astatham-gatkSNPtitech_badpromotershomalt
98.7952
100.0000
97.6190
41.6667
4104111
100.0000
astatham-gatkSNPtvHG002compoundhethet
98.5818
97.4321
99.7590
55.5988
455312045531111
100.0000
astatham-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8165
99.6633
99.9702
61.6256
10063341006333
100.0000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.6300
99.3177
99.9443
71.5425
538637538633
100.0000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.6028
97.4359
99.7980
86.4421
4941349411
100.0000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.8706
96.2846
99.5098
88.3340
121847121866
100.0000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
97.4326
95.5919
99.3455
89.4983
7593575955
100.0000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.5976
97.4414
99.7817
85.6785
4571245711
100.0000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.4634
98.9987
99.9326
79.6378
148315148311
100.0000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.6300
99.3177
99.9443
71.5425
538637538633
100.0000
astatham-gatkSNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
99.6595
99.3775
99.9431
60.9816
175611175611
100.0000
astatham-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8713
99.7942
99.9485
59.3783
38798387922
100.0000
astatham-gatkSNPtvsegduphomalt
99.8765
99.9382
99.8149
89.4470
32362323666
100.0000
astatham-gatkSNPtvtech_badpromoters*
97.1831
95.8333
98.5714
53.6424
6936911
100.0000
astatham-gatkSNPtvtech_badpromotershomalt
97.4359
97.4359
97.4359
51.8519
3813811
100.0000
asubramanian-gatkINDEL*func_cdshomalt
99.3348
99.1150
99.5556
39.8396
224222411
100.0000
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
90.3469
83.8323
97.9592
70.6587
1402714433
100.0000
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
96.0495
93.5622
98.6726
77.3774
2181522333
100.0000
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
96.5069
93.9394
99.2188
80.8096
124812711
100.0000
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
97.8256
96.4486
99.2424
73.9001
5161952444
100.0000
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50hetalt
99.5679
99.2416
99.8964
30.1737
916796411
100.0000
asubramanian-gatkINDEL*segduphetalt
95.6238
92.3077
99.1870
94.8211
1201012211
100.0000
asubramanian-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
91.8728
90.9091
92.8571
84.4444
1011311
100.0000
asubramanian-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
95.1923
94.7368
95.6522
72.2892
1812211
100.0000
asubramanian-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.3046
98.8920
99.7207
63.3572
357435711
100.0000
asubramanian-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
95.5262
96.9639
94.1304
83.3091
511164332727
100.0000
asubramanian-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.0291
99.3506
98.7097
63.5580
459345966
100.0000
asubramanian-gatkINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200homalt
96.0396
95.0980
97.0000
64.6643
9759733
100.0000
asubramanian-gatkINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200*
93.3333
91.3043
95.4545
67.8832
4244222
100.0000
asubramanian-gatkINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200het
77.4194
75.0000
80.0000
92.1875
62411
100.0000
asubramanian-gatkINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200homalt
96.2963
100.0000
92.8571
50.0000
1301311
100.0000
asubramanian-gatkINDELD16_PLUSmap_l100_m1_e0hetalt
87.5829
80.7692
95.6522
79.6460
2152211
100.0000
asubramanian-gatkINDELD16_PLUSmap_l100_m2_e0hetalt
87.6588
80.7692
95.8333
80.1653
2152311
100.0000
asubramanian-gatkINDELD16_PLUSmap_l100_m2_e1hetalt
87.3950
80.0000
96.2963
79.2308
2462611
100.0000
bgallagher-sentieonINDELD6_15segduphomalt
95.2381
100.0000
90.9091
92.3505
5005055
100.0000
bgallagher-sentieonINDELI16_PLUS*hetalt
95.0034
90.6101
99.8444
57.6357
1901197192533
100.0000
bgallagher-sentieonINDELI16_PLUSHG002complexvar*
98.3871
97.8610
98.9189
67.3392
12812812811414
100.0000
bgallagher-sentieonINDELI16_PLUSHG002complexvarhetalt
96.7847
94.0299
99.7059
69.0909
3152033911
100.0000
bgallagher-sentieonINDELI16_PLUSHG002complexvarhomalt
97.9398
100.0000
95.9627
70.5667
30903091313
100.0000
bgallagher-sentieonINDELI16_PLUSHG002compoundhet*
93.0399
90.7606
95.4367
53.0631
194519819459393
100.0000
bgallagher-sentieonINDELI16_PLUSHG002compoundhethet
83.6026
95.7447
74.1935
93.6735
4522388
100.0000
bgallagher-sentieonINDELI16_PLUSHG002compoundhethomalt
6.5934
100.0000
3.4091
71.4286
3038585
100.0000
bgallagher-sentieonINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.5572
93.6535
99.6466
65.5088
5463756422
100.0000