PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
81601-81650 / 86044 show all
asubramanian-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
94.5946
97.2222
92.1053
70.3125
3513533
100.0000
asubramanian-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
97.2687
95.4802
99.1254
71.1036
3381634033
100.0000
asubramanian-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
96.7391
96.7391
96.7391
70.4180
8938933
100.0000
asubramanian-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
98.1245
97.1074
99.1632
70.0501
235723722
100.0000
asubramanian-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
97.0588
97.0588
97.0588
71.0638
6626622
100.0000
asubramanian-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.0086
86.2259
98.6226
46.2222
3135035855
100.0000
asubramanian-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
78.0641
95.8333
65.8537
76.1628
231271414
100.0000
asubramanian-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
81.6845
71.0843
96.0000
30.5556
59247233
100.0000
asubramanian-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_51to200homalt
0.0000
0.0000
25.0000
78.9474
00133
100.0000
asubramanian-gatkINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
98.4507
98.1481
98.7552
66.1041
212423833
100.0000
asubramanian-gatkINDELI6_15lowcmp_SimpleRepeat_quadTR_51to200homalt
0.0000
0.0000
57.1429
83.3333
00433
100.0000
asubramanian-gatkINDELI6_15lowcmp_SimpleRepeat_triTR_11to50homalt
97.6276
96.6102
98.6667
60.1064
5727411
100.0000
asubramanian-gatkINDELI6_15map_l100_m0_e0*
88.5764
81.8182
96.5517
93.4389
2762811
100.0000
asubramanian-gatkINDELI6_15map_l100_m0_e0het
87.6827
82.3529
93.7500
94.3060
1431511
100.0000
asubramanian-gatkINDELI6_15map_l125_m0_e0*
81.7337
73.3333
92.3077
96.1310
1141211
100.0000
asubramanian-gatkINDELI6_15map_l125_m0_e0het
82.9630
77.7778
88.8889
95.9641
72811
100.0000
asubramanian-gatkINDELI6_15map_l125_m1_e0*
87.5000
79.2453
97.6744
93.5435
42114211
100.0000
asubramanian-gatkINDELI6_15map_l125_m1_e0het
85.1852
76.6667
95.8333
94.2029
2372311
100.0000
asubramanian-gatkINDELI6_15map_l125_m2_e0*
87.5000
79.2453
97.6744
94.2513
42114211
100.0000
asubramanian-gatkINDELI6_15map_l125_m2_e0het
85.1852
76.6667
95.8333
94.7598
2372311
100.0000
asubramanian-gatkINDELI6_15map_l125_m2_e1*
87.5000
79.2453
97.6744
94.4156
42114211
100.0000
asubramanian-gatkINDELI6_15map_l125_m2_e1het
85.1852
76.6667
95.8333
94.8827
2372311
100.0000
asubramanian-gatkINDELI6_15map_l150_m0_e0*
72.2892
62.5000
85.7143
97.4729
53611
100.0000
asubramanian-gatkINDELI6_15map_l150_m0_e0het
77.4194
75.0000
80.0000
97.3545
31411
100.0000
asubramanian-gatkINDELI6_15map_l150_m1_e0*
81.8182
72.0000
94.7368
96.4618
1871811
100.0000
asubramanian-gatkINDELI6_15map_l150_m1_e0het
81.4815
73.3333
91.6667
96.5517
1141111
100.0000
asubramanian-gatkINDELI6_15map_l150_m2_e0*
81.8182
72.0000
94.7368
96.8333
1871811
100.0000
asubramanian-gatkINDELI6_15map_l150_m2_e0het
81.4815
73.3333
91.6667
96.8504
1141111
100.0000
asubramanian-gatkINDELI6_15map_l150_m2_e1*
83.3333
74.0741
95.2381
96.6346
2072011
100.0000
asubramanian-gatkINDELI6_15map_l150_m2_e1het
82.7586
75.0000
92.3077
96.7089
1241211
100.0000
asubramanian-gatkINDELI6_15map_l250_m0_e0*
0.0000
0.0000
99.2806
01011
100.0000
asubramanian-gatkINDELI6_15map_l250_m0_e0het
0.0000
0.0000
98.9691
00011
100.0000
asubramanian-gatkINDELI6_15map_l250_m1_e0*
67.7966
57.1429
83.3333
98.1928
43511
100.0000
asubramanian-gatkINDELI6_15map_l250_m1_e0het
77.4194
75.0000
80.0000
97.7376
31411
100.0000
asubramanian-gatkINDELI6_15map_l250_m2_e0*
71.4286
62.5000
83.3333
98.3380
53511
100.0000
asubramanian-gatkINDELI6_15map_l250_m2_e0het
80.0000
80.0000
80.0000
97.9424
41411
100.0000
asubramanian-gatkINDELI6_15map_l250_m2_e1*
71.4286
62.5000
83.3333
98.4127
53511
100.0000
asubramanian-gatkINDELI6_15map_l250_m2_e1het
80.0000
80.0000
80.0000
98.0315
41411
100.0000
asubramanian-gatkINDELI6_15map_sirenhet
91.3236
84.6154
99.1870
88.4507
1212212211
100.0000
asubramanian-gatkSNP*map_l250_m0_e0*
30.8789
18.2670
99.7442
99.0504
390174539011
100.0000
asubramanian-gatkSNP*map_l250_m0_e0het
31.5260
18.7251
99.6466
99.1633
282122428211
100.0000
asubramanian-gatkSNP*tech_badpromoters*
98.4026
98.0892
98.7179
49.3506
154315422
100.0000
asubramanian-gatkSNP*tech_badpromotershomalt
98.1366
98.7500
97.5309
46.7105
7917922
100.0000
asubramanian-gatkSNPtiHG002complexvarhomalt
98.1740
96.4210
99.9920
18.6413
18653969241865291515
100.0000
asubramanian-gatkSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.1770
98.4477
99.9171
58.7551
120519120511
100.0000
asubramanian-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.4277
98.8814
99.9800
49.5688
9989113999822
100.0000
asubramanian-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.4262
96.9096
99.9911
63.7599
111953571119911
100.0000
asubramanian-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.2864
98.6702
99.9102
42.2199
111315111311
100.0000
asubramanian-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
95.9207
92.7632
99.3007
91.9255
1411114211
100.0000
asubramanian-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.4177
98.8829
99.9582
72.7717
239027239411
100.0000