PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
81551-81600 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | I16_PLUS | HG002complexvar | * | 97.0837 | 95.3400 | 98.8924 | 68.3287 | 1248 | 61 | 1250 | 14 | 14 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | HG002complexvar | het | 97.3776 | 95.0376 | 99.8358 | 65.4566 | 632 | 33 | 608 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | HG002complexvar | hetalt | 95.7378 | 92.8358 | 98.8270 | 70.0351 | 311 | 24 | 337 | 4 | 4 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | HG002complexvar | homalt | 97.9133 | 98.7055 | 97.1338 | 71.1927 | 305 | 4 | 305 | 9 | 9 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | HG002compoundhet | het | 80.8415 | 91.4894 | 72.4138 | 94.0574 | 43 | 4 | 21 | 8 | 8 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | HG002compoundhet | hetalt | 94.3857 | 90.2532 | 98.9147 | 46.6501 | 1889 | 204 | 1914 | 21 | 21 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 94.7213 | 91.5952 | 98.0684 | 63.9529 | 534 | 49 | 660 | 13 | 13 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 95.5476 | 92.4127 | 98.9026 | 69.5997 | 609 | 50 | 721 | 8 | 8 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.6330 | 82.7586 | 97.7528 | 84.0215 | 72 | 15 | 87 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 93.7500 | 1 | 0 | 2 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 90.8989 | 84.9624 | 97.7273 | 86.2069 | 113 | 20 | 129 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 92.7463 | 87.9765 | 98.0630 | 55.8289 | 300 | 41 | 405 | 8 | 8 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 91.2260 | 85.8491 | 97.3214 | 84.7411 | 91 | 15 | 109 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 93.0561 | 88.8112 | 97.7273 | 51.9782 | 254 | 32 | 344 | 8 | 8 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 93.3603 | 88.9474 | 98.2340 | 60.9483 | 338 | 42 | 445 | 8 | 8 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 95.5476 | 92.4127 | 98.9026 | 69.5997 | 609 | 50 | 721 | 8 | 8 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 92.0804 | 87.4552 | 97.2222 | 61.8644 | 244 | 35 | 350 | 10 | 10 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.6974 | 93.6170 | 97.8723 | 81.0484 | 44 | 3 | 46 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.5475 | 96.4286 | 96.6667 | 60.5263 | 27 | 1 | 29 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.6553 | 94.0476 | 99.4118 | 79.9292 | 158 | 10 | 169 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.2984 | 97.1429 | 99.4819 | 65.9011 | 170 | 5 | 192 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_siren | homalt | 92.6829 | 90.4762 | 95.0000 | 95.0249 | 19 | 2 | 19 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | segdup | * | 95.6522 | 93.6170 | 97.7778 | 96.4143 | 44 | 3 | 44 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | segdup | hetalt | 75.0000 | 75.0000 | 75.0000 | 97.4522 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.0337 | 84.5238 | 98.6301 | 61.1702 | 71 | 13 | 72 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.2630 | 99.0000 | 97.5369 | 60.9615 | 198 | 2 | 198 | 5 | 5 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.3303 | 93.7500 | 99.0566 | 76.1261 | 105 | 7 | 105 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.5820 | 99.5816 | 99.5825 | 75.9054 | 476 | 2 | 477 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7114 | 99.7110 | 99.7118 | 79.0838 | 345 | 1 | 346 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 91.3367 | 84.1772 | 99.8273 | 38.7302 | 532 | 100 | 578 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 90.5660 | 88.8889 | 92.3077 | 83.7500 | 24 | 3 | 24 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 53.8462 | 64.8649 | 0 | 0 | 7 | 6 | 6 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.2099 | 98.5704 | 99.8579 | 70.2128 | 2620 | 38 | 2810 | 4 | 4 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.0728 | 96.5190 | 99.6774 | 73.3677 | 305 | 11 | 309 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7495 | 99.7934 | 99.7056 | 64.6549 | 966 | 2 | 1016 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.9820 | 98.8732 | 99.0909 | 66.0303 | 1053 | 12 | 1199 | 11 | 11 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 86.3636 | 100.0000 | 76.0000 | 85.1190 | 1 | 0 | 19 | 6 | 6 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.1674 | 98.6667 | 99.6732 | 58.9400 | 1036 | 14 | 1220 | 4 | 4 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.5619 | 97.6596 | 99.4810 | 64.5181 | 459 | 11 | 575 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.4622 | 99.2509 | 99.6743 | 63.1894 | 265 | 2 | 306 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l100_m0_e0 | homalt | 96.0199 | 92.7885 | 99.4845 | 82.6009 | 193 | 15 | 193 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l100_m1_e0 | homalt | 96.4155 | 93.4363 | 99.5910 | 81.7265 | 484 | 34 | 487 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l100_m2_e0 | homalt | 96.4050 | 93.4087 | 99.6000 | 83.0048 | 496 | 35 | 498 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l100_m2_e1 | homalt | 96.4668 | 93.5185 | 99.6071 | 83.0446 | 505 | 35 | 507 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | segdup | homalt | 99.3644 | 99.1543 | 99.5754 | 92.7483 | 469 | 4 | 469 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | func_cds | * | 93.9759 | 90.6977 | 97.5000 | 42.8571 | 39 | 4 | 39 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | func_cds | homalt | 93.3333 | 93.3333 | 93.3333 | 40.0000 | 14 | 1 | 14 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.7942 | 85.6604 | 98.8743 | 47.1754 | 454 | 76 | 527 | 6 | 6 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 86.3432 | 96.6102 | 78.0488 | 75.0760 | 57 | 2 | 64 | 18 | 18 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 92.5816 | 87.6404 | 98.1132 | 73.8056 | 156 | 22 | 156 | 3 | 3 | 100.0000 | |