PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
81501-81550 / 86044 show all
anovak-vgSNPtvdecoyhet
0.0000
0.0000
99.9986
00011
100.0000
anovak-vgSNPtvtech_badpromoters*
89.6729
84.7222
95.2381
42.7273
61116033
100.0000
anovak-vgSNPtvtech_badpromotershet
85.7143
81.8182
90.0000
48.2759
2762733
100.0000
astatham-gatkINDEL*func_cdshomalt
99.7792
100.0000
99.5595
38.4824
226022611
100.0000
astatham-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
93.9775
89.0167
99.5238
40.0705
340442035531717
100.0000
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
98.7788
99.3179
98.2456
73.2684
72857281313
100.0000
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
98.0429
96.5665
99.5652
76.2642
225822911
100.0000
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
98.0901
96.9697
99.2366
79.9080
128413011
100.0000
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
93.6552
88.4686
99.4878
37.7483
240931425251313
100.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
87.4680
77.9553
99.6251
31.2943
976276106344
100.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
98.2046
97.0093
99.4297
73.5811
5191652333
100.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.8721
97.9866
99.7738
42.6347
262854264666
100.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200hetalt
97.5860
95.8996
99.3328
33.9394
114649119188
100.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50hetalt
99.6744
99.4583
99.8915
29.8859
918592111
100.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9071
100.0000
99.8145
47.5553
21520215244
100.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_triTR_51to200homalt
97.9167
100.0000
95.9184
54.2056
4704722
100.0000
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
88.0126
79.7101
98.2456
58.3942
55145611
100.0000
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
98.8342
98.4496
99.2218
63.6492
254425522
100.0000
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
95.8333
93.2432
98.5714
82.3678
6956911
100.0000
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
95.8904
94.5946
97.2222
88.3871
3523511
100.0000
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
80.2738
67.8208
98.3287
28.7698
33315835366
100.0000
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_51to200homalt
70.5882
92.9577
56.8966
51.0549
665665050
100.0000
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10hetalt
97.9056
96.5937
99.2537
71.5700
3971439933
100.0000
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8131
99.6954
99.9311
54.3062
10147311014877
100.0000
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.6034
99.3181
99.8903
51.3153
364125364244
100.0000
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
99.6750
99.5671
99.7831
30.2572
460246011
100.0000
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_triTR_51to200homalt
96.2963
100.0000
92.8571
61.1111
1301311
100.0000
asubramanian-gatkINDELD1_5segduphomalt
99.5816
99.4429
99.7207
94.5193
357235711
100.0000
asubramanian-gatkINDELD6_15HG002complexvarhomalt
99.0619
99.3157
98.8095
62.8201
1161811621414
100.0000
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
96.1165
94.7368
97.5369
77.2676
1981119855
100.0000
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
96.8254
96.0630
97.6000
79.5417
122512233
100.0000
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
91.8919
87.1795
97.1429
60.6742
3453411
100.0000
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
97.6744
97.6744
97.6744
77.7202
4214211
100.0000
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.3019
98.7847
99.8246
69.4206
569756911
100.0000
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
94.4781
92.7273
96.2963
63.5135
5145222
100.0000
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.4851
99.1786
99.7934
67.2973
483448311
100.0000
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
93.7973
90.9091
96.8750
63.2184
3033111
100.0000
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
84.9521
75.2294
97.5610
27.3958
6562166801717
100.0000
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10*
99.4357
99.2481
99.6241
82.5115
264226511
100.0000
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
97.3328
97.2973
97.3684
61.6162
3613711
100.0000
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
99.2314
98.7059
99.7625
51.4137
8391184022
100.0000
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.3908
99.0173
99.7672
36.4175
171317171444
100.0000
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
99.1404
98.4353
99.8557
46.9778
6921169211
100.0000
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
99.3228
99.3228
99.3228
34.5643
440344033
100.0000
asubramanian-gatkINDELD6_15map_l100_m1_e0hetalt
95.4545
92.6471
98.4375
73.3333
6356311
100.0000
asubramanian-gatkINDELD6_15map_l100_m2_e0hetalt
95.4545
92.6471
98.4375
74.5020
6356311
100.0000
asubramanian-gatkINDELD6_15map_l100_m2_e1hetalt
95.0355
91.7808
98.5294
74.4361
6766711
100.0000
asubramanian-gatkINDELD6_15segdup*
96.0000
94.2408
97.8261
94.5287
1801118044
100.0000
asubramanian-gatkINDELD6_15segduphomalt
96.1538
100.0000
92.5926
92.2747
5005044
100.0000
asubramanian-gatkINDELI16_PLUS*hetalt
94.3306
90.2765
98.7661
58.9229
189420419212424
100.0000