PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
81401-81450 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m0_e0 | homalt | 98.8327 | 98.4496 | 99.2188 | 81.9337 | 254 | 4 | 254 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.2366 | 98.8176 | 99.6593 | 81.5176 | 585 | 7 | 585 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.2605 | 98.8543 | 99.6700 | 82.3014 | 604 | 7 | 604 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.2713 | 98.8710 | 99.6748 | 82.3782 | 613 | 7 | 613 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m0_e0 | homalt | 97.9592 | 97.2973 | 98.6301 | 85.5015 | 144 | 4 | 144 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m1_e0 | homalt | 98.8473 | 98.2808 | 99.4203 | 83.7952 | 343 | 6 | 343 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m2_e0 | homalt | 98.8950 | 98.3516 | 99.4444 | 84.6743 | 358 | 6 | 358 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m2_e1 | homalt | 98.9189 | 98.3871 | 99.4565 | 84.6603 | 366 | 6 | 366 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m0_e0 | homalt | 97.6190 | 96.4706 | 98.7952 | 89.0933 | 82 | 3 | 82 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m1_e0 | homalt | 98.4479 | 97.3684 | 99.5516 | 86.1491 | 222 | 6 | 222 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m2_e0 | homalt | 98.5386 | 97.5207 | 99.5781 | 86.9780 | 236 | 6 | 236 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.3740 | 97.5806 | 99.1803 | 86.8888 | 242 | 6 | 242 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_siren | homalt | 99.5289 | 99.4007 | 99.6575 | 79.9209 | 1161 | 7 | 1164 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | segdup | homalt | 99.7222 | 100.0000 | 99.4460 | 94.1708 | 359 | 0 | 359 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | * | hetalt | 96.4666 | 93.1857 | 99.9870 | 32.1144 | 7617 | 557 | 7666 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | HG002complexvar | hetalt | 97.2668 | 94.7680 | 99.9010 | 47.1204 | 960 | 53 | 1009 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | HG002complexvar | homalt | 99.4894 | 100.0000 | 98.9839 | 62.5911 | 1169 | 0 | 1169 | 12 | 12 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | HG002compoundhet | homalt | 25.1309 | 100.0000 | 14.3713 | 65.4244 | 24 | 0 | 24 | 143 | 143 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.1644 | 85.5030 | 99.9515 | 30.1491 | 2023 | 343 | 2061 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.4144 | 93.0885 | 99.9868 | 28.9050 | 7502 | 557 | 7550 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 94.5545 | 91.3876 | 97.9487 | 73.9305 | 191 | 18 | 191 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 93.8776 | 90.5512 | 97.4576 | 75.5694 | 115 | 12 | 115 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.8506 | 100.0000 | 97.7273 | 76.5957 | 43 | 0 | 43 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.6854 | 97.7431 | 99.6460 | 66.1879 | 563 | 13 | 563 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4851 | 99.1786 | 99.7934 | 64.4901 | 483 | 4 | 483 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.1109 | 98.8558 | 86.2275 | 47.5941 | 432 | 5 | 432 | 69 | 69 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.4144 | 93.0885 | 99.9868 | 28.9050 | 7502 | 557 | 7550 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 81.1064 | 76.2066 | 86.6795 | 41.5020 | 900 | 281 | 898 | 138 | 138 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 67.7708 | 83.7838 | 56.8966 | 68.7050 | 124 | 24 | 99 | 75 | 75 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 82.1053 | 96.8944 | 71.2329 | 36.7052 | 156 | 5 | 156 | 63 | 63 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6475 | 99.7647 | 99.5305 | 49.7048 | 848 | 2 | 848 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.7499 | 93.8209 | 99.8677 | 23.9437 | 744 | 49 | 755 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8873 | 100.0000 | 99.7748 | 33.9286 | 443 | 0 | 443 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.8571 | 96.4789 | 99.2754 | 41.7722 | 137 | 5 | 137 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 95.8333 | 95.8333 | 95.8333 | 71.7647 | 23 | 1 | 23 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m1_e0 | homalt | 98.4375 | 98.4375 | 98.4375 | 84.1975 | 63 | 1 | 63 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m2_e0 | homalt | 98.4615 | 98.4615 | 98.4615 | 84.9188 | 64 | 1 | 64 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m2_e1 | homalt | 98.5075 | 98.5075 | 98.5075 | 84.8073 | 66 | 1 | 66 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m1_e0 | * | 97.3913 | 95.7265 | 99.1150 | 87.6096 | 112 | 5 | 112 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m1_e0 | het | 96.8254 | 95.3125 | 98.3871 | 89.1986 | 61 | 3 | 61 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m2_e0 | * | 96.7480 | 94.4444 | 99.1667 | 87.9154 | 119 | 7 | 119 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m2_e0 | het | 95.6522 | 92.9577 | 98.5075 | 89.2456 | 66 | 5 | 66 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m2_e1 | * | 96.3855 | 93.7500 | 99.1736 | 88.0788 | 120 | 8 | 120 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m2_e1 | het | 95.6522 | 92.9577 | 98.5075 | 89.4155 | 66 | 5 | 66 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | segdup | * | 95.4424 | 93.1937 | 97.8022 | 92.3817 | 178 | 13 | 178 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | segdup | homalt | 96.1538 | 100.0000 | 92.5926 | 91.4961 | 50 | 0 | 50 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | * | hetalt | 94.2306 | 89.1325 | 99.9472 | 55.4588 | 1870 | 228 | 1892 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | HG002complexvar | het | 98.7816 | 97.7444 | 99.8410 | 62.2675 | 650 | 15 | 628 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | HG002compoundhet | het | 83.6199 | 89.3617 | 78.5714 | 93.1540 | 42 | 5 | 22 | 6 | 6 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 95.9028 | 92.2813 | 99.8201 | 63.6601 | 538 | 45 | 555 | 1 | 1 | 100.0000 | |