PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
81001-81050 / 86044 show all
ndellapenna-hhgaSNPtimap_l100_m0_e0homalt
99.6905
99.4469
99.9354
59.4017
773143773155
100.0000
ndellapenna-hhgaSNPtimap_l100_m1_e0hetalt
90.9091
86.2069
96.1538
77.1930
2542511
100.0000
ndellapenna-hhgaSNPtimap_l100_m1_e0homalt
99.7965
99.6659
99.9274
59.1233
1790060179001313
100.0000
ndellapenna-hhgaSNPtimap_l100_m2_e0hetalt
91.2281
86.6667
96.2963
79.0698
2642611
100.0000
ndellapenna-hhgaSNPtimap_l100_m2_e0homalt
99.7949
99.6723
99.9179
61.7916
1824960182491515
100.0000
ndellapenna-hhgaSNPtimap_l100_m2_e1hetalt
91.5254
87.0968
96.4286
78.6260
2742711
100.0000
ndellapenna-hhgaSNPtimap_l100_m2_e1homalt
99.7970
99.6756
99.9187
61.7788
1843460184341515
100.0000
ndellapenna-hhgaSNPtimap_l125_m0_e0homalt
99.6092
99.3097
99.9104
66.0377
446031446044
100.0000
ndellapenna-hhgaSNPtimap_l125_m1_e0homalt
99.7415
99.5473
99.9364
64.8588
10995501099577
100.0000
ndellapenna-hhgaSNPtimap_l125_m2_e0homalt
99.7486
99.5598
99.9381
67.6520
11308501130877
100.0000
ndellapenna-hhgaSNPtimap_l125_m2_e1homalt
99.7508
99.5636
99.9387
67.6903
11408501140877
100.0000
ndellapenna-hhgaSNPtimap_l150_m0_e0homalt
99.5641
99.2756
99.8543
71.8779
274120274144
100.0000
ndellapenna-hhgaSNPtimap_l150_m1_e0homalt
99.6785
99.4404
99.9177
69.6369
728641728666
100.0000
ndellapenna-hhgaSNPtimap_l150_m2_e0homalt
99.6907
99.4617
99.9209
72.2145
757541757566
100.0000
ndellapenna-hhgaSNPtimap_l150_m2_e1homalt
99.6938
99.4670
99.9217
72.2586
765241765266
100.0000
ndellapenna-hhgaSNPtimap_l250_m0_e0homalt
98.9619
98.3945
99.5360
89.9276
429742922
100.0000
ndellapenna-hhgaSNPtimap_l250_m1_e0homalt
99.2491
98.6932
99.8112
85.5873
158621158633
100.0000
rpoplin-dv42INDELD16_PLUS*hetalt
90.5247
83.1350
99.3563
34.4206
160732616981111
100.0000
rpoplin-dv42INDELD16_PLUSHG002complexvarhetalt
82.7498
72.4696
96.4286
49.8208
179682701010
100.0000
rpoplin-dv42INDELD16_PLUSHG002compoundhet*
86.6377
85.3054
88.0123
33.8869
19973441997272272
100.0000
rpoplin-dv42INDELD16_PLUSHG002compoundhethet
71.2910
94.8148
57.1195
50.0000
38421349262262
100.0000
rpoplin-dv42INDELD16_PLUSHG002compoundhethetalt
90.6567
83.2469
99.5146
24.3343
1605323164088
100.0000
rpoplin-dv42INDELD16_PLUSHG002compoundhethomalt
88.8889
100.0000
80.0000
68.7500
80822
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
88.3369
79.4872
99.4041
37.5744
77520083455
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_merged*
57.1429
50.0000
66.6667
97.9021
22211
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
66.6667
100.0000
50.0000
97.9381
10111
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
92.3110
86.1669
99.3986
32.5999
1115179115777
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
90.5141
83.1176
99.3556
34.2956
160532616961111
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
57.1429
50.0000
66.6667
97.8102
22211
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
66.6667
100.0000
50.0000
97.8495
10111
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.4427
99.6296
99.2565
60.1481
269126722
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
87.5916
78.3357
99.3277
35.7451
54615159144
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
84.5683
96.1187
75.4960
75.8909
84234761247247
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
90.1203
82.4985
99.2938
30.7241
133428314061010
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
92.2757
91.7744
92.7824
61.6372
17741591774138138
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
87.0552
97.3435
78.7338
77.6244
51314485131131
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
91.6249
85.0636
99.2832
28.0928
80314183166
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.4571
99.1342
99.7821
56.9822
458445811
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
89.8927
82.1104
99.3046
32.2337
135429514281010
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
90.5141
83.1176
99.3556
34.2956
160532616961111
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
90.2013
82.6531
99.2669
29.5455
64813667755
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50homalt
99.3711
98.9975
99.7475
60.5184
395439511
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200het
68.7241
97.0414
53.2000
69.5122
1645133117117
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10*
88.7097
80.8824
98.2143
96.7098
55135511
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10het
87.5000
79.5455
97.2222
97.0322
3593511
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50hetalt
97.3655
95.4268
99.3846
34.3434
3131532322
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
93.4570
88.8571
98.5591
32.4903
3113934255
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200homalt
95.4315
92.1569
98.9474
60.0840
9489411
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200*
85.0575
80.4348
90.2439
53.9326
3793744
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200het
59.7015
62.5000
57.1429
82.5000
53433
100.0000