PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
80951-81000 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | I1_5 | segdup | hetalt | 98.9899 | 100.0000 | 98.0000 | 96.1774 | 48 | 0 | 49 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | segdup | homalt | 99.3684 | 99.7886 | 98.9518 | 92.7375 | 472 | 1 | 472 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.3630 | 92.5926 | 96.2025 | 76.1329 | 75 | 6 | 76 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 91.6667 | 91.6667 | 91.6667 | 72.7273 | 33 | 3 | 33 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 87.5000 | 79.0634 | 97.9522 | 47.2072 | 287 | 76 | 287 | 6 | 6 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 75.9910 | 61.9565 | 98.2456 | 60.6897 | 57 | 35 | 56 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 76.5108 | 62.6506 | 98.2456 | 36.6667 | 52 | 31 | 56 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.3740 | 94.1935 | 98.6577 | 81.6728 | 146 | 9 | 147 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 95.8812 | 93.5484 | 98.3333 | 84.2520 | 58 | 4 | 59 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.9796 | 97.9592 | 98.0000 | 82.2064 | 48 | 1 | 49 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 94.0508 | 90.1716 | 98.2788 | 45.2919 | 578 | 63 | 571 | 10 | 10 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 91.0394 | 84.1060 | 99.2188 | 46.4435 | 127 | 24 | 127 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 88.8889 | 0 | 0 | 0 | 3 | 3 | 100.0000 | ||
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 97.8885 | 97.4684 | 98.3122 | 25.4717 | 231 | 6 | 233 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.4359 | 96.6102 | 98.2759 | 58.5714 | 57 | 2 | 57 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_siren | hetalt | 91.9492 | 87.5000 | 96.8750 | 79.3548 | 63 | 9 | 62 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_siren | homalt | 96.6292 | 95.5556 | 97.7273 | 81.5514 | 86 | 4 | 86 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | SNP | * | * | hetalt | 98.9643 | 98.7371 | 99.1926 | 47.1341 | 860 | 11 | 860 | 7 | 7 | 100.0000 | |
| ndellapenna-hhga | SNP | * | HG002complexvar | hetalt | 98.7097 | 98.7097 | 98.7097 | 40.9524 | 306 | 4 | 306 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.2963 | 100.0000 | 92.8571 | 79.7101 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 91.7765 | 90.9091 | 92.6606 | 88.7745 | 100 | 10 | 101 | 8 | 8 | 100.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 79.4521 | 69.0476 | 93.5484 | 96.0710 | 29 | 13 | 29 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 75.5556 | 62.9630 | 94.4444 | 97.0540 | 17 | 10 | 17 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 85.7143 | 80.0000 | 92.3077 | 92.6966 | 12 | 3 | 12 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 62.5000 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l100_m0_e0 | hetalt | 90.3226 | 87.5000 | 93.3333 | 79.1667 | 14 | 2 | 14 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l100_m1_e0 | hetalt | 90.9091 | 85.3659 | 97.2222 | 77.7778 | 35 | 6 | 35 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l100_m2_e0 | hetalt | 91.1392 | 85.7143 | 97.2973 | 79.7814 | 36 | 6 | 36 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l100_m2_e1 | hetalt | 91.3580 | 86.0465 | 97.3684 | 79.4595 | 37 | 6 | 37 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l250_m0_e0 | homalt | 98.9608 | 98.4102 | 99.5177 | 90.5327 | 619 | 10 | 619 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l250_m1_e0 | homalt | 99.2653 | 98.7414 | 99.7948 | 85.6165 | 2432 | 31 | 2432 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l250_m2_e0 | homalt | 99.3266 | 98.8459 | 99.8120 | 86.8985 | 2655 | 31 | 2655 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l250_m2_e1 | homalt | 99.3346 | 98.8595 | 99.8143 | 86.9517 | 2687 | 31 | 2687 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_siren | hetalt | 93.5065 | 88.8889 | 98.6301 | 75.8278 | 72 | 9 | 72 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | * | segdup | homalt | 99.7258 | 99.8883 | 99.5639 | 88.9154 | 10731 | 12 | 10731 | 47 | 47 | 100.0000 | |
| ndellapenna-hhga | SNP | * | tech_badpromoters | homalt | 99.3789 | 100.0000 | 98.7654 | 50.6098 | 80 | 0 | 80 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | * | hetalt | 98.7952 | 98.6254 | 98.9655 | 47.9354 | 574 | 8 | 574 | 6 | 6 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | HG002complexvar | hetalt | 98.3051 | 98.0676 | 98.5437 | 41.1429 | 203 | 4 | 203 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.2625 | 98.9379 | 99.5892 | 62.6573 | 1211 | 13 | 1212 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3077 | 100.0000 | 85.7143 | 81.0811 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7270 | 99.6589 | 99.7951 | 46.6278 | 1461 | 5 | 1461 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.6503 | 99.6503 | 99.6503 | 49.2608 | 855 | 3 | 855 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.8054 | 92.7536 | 92.8571 | 88.0342 | 64 | 5 | 65 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.5714 | 68.7500 | 91.6667 | 97.1223 | 11 | 5 | 11 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 70.5882 | 60.0000 | 85.7143 | 97.7492 | 6 | 4 | 6 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8276 | 99.7048 | 99.9507 | 44.3071 | 4053 | 12 | 4053 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 66.6667 | 100.0000 | 50.0000 | 71.4286 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 79.0492 | 67.3267 | 95.7143 | 92.4812 | 68 | 33 | 67 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 75.6258 | 63.6364 | 93.1818 | 93.3131 | 42 | 24 | 41 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_l100_m0_e0 | hetalt | 88.8889 | 85.7143 | 92.3077 | 75.9259 | 12 | 2 | 12 | 1 | 1 | 100.0000 | |