PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
80851-80900 / 86044 show all
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
92.8571
100.0000
86.6667
86.3636
1201322
100.0000
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_quadTR_51to200homalt
80.2676
68.5714
96.7742
85.1675
24113011
100.0000
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.9300
99.9299
99.9300
23.7460
14261142811
100.0000
ltrigg-rtg2SNPtimap_l100_m0_e0homalt
99.7358
99.5369
99.9354
58.2970
773836773855
100.0000
ltrigg-rtg2SNPtimap_l100_m1_e0homalt
99.8049
99.6715
99.9386
57.1476
1790159179001111
100.0000
ltrigg-rtg2SNPtimap_l100_m2_e0homalt
99.8031
99.6778
99.9288
59.8461
1825059182491313
100.0000
ltrigg-rtg2SNPtimap_l100_m2_e1homalt
99.8051
99.6810
99.9295
59.8306
1843559184341313
100.0000
ltrigg-rtg2SNPtimap_l125_m0_e0homalt
99.6428
99.3765
99.9105
65.1370
446328446344
100.0000
ltrigg-rtg2SNPtimap_l125_m1_e0homalt
99.7369
99.5292
99.9454
62.9489
10993521099366
100.0000
ltrigg-rtg2SNPtimap_l125_m2_e0homalt
99.7442
99.5422
99.9470
65.7720
11306521130666
100.0000
ltrigg-rtg2SNPtimap_l125_m2_e1homalt
99.7464
99.5462
99.9474
65.8140
11406521140766
100.0000
ltrigg-rtg2SNPtimap_l150_m0_e0homalt
99.5276
99.2032
99.8541
71.1520
273922273844
100.0000
ltrigg-rtg2SNPtimap_l150_m1_e0homalt
99.6922
99.4677
99.9178
67.8010
728839728966
100.0000
ltrigg-rtg2SNPtimap_l150_m2_e0homalt
99.7039
99.4879
99.9209
70.3819
757739757866
100.0000
ltrigg-rtg2SNPtimap_l150_m2_e1homalt
99.7069
99.4930
99.9217
70.4375
765439765666
100.0000
ltrigg-rtg2SNPtimap_l250_m0_e0homalt
99.4273
99.5413
99.3135
89.5279
434243433
100.0000
ltrigg-rtg2SNPtimap_l250_m1_e0homalt
99.6259
99.4400
99.8126
84.3683
15989159833
100.0000
ltrigg-rtg2SNPtimap_l250_m2_e0homalt
99.6564
99.4854
99.8279
85.6390
17409174033
100.0000
ltrigg-rtg2SNPtimap_l250_m2_e1homalt
99.6608
99.4921
99.8301
85.6923
17639176333
100.0000
ltrigg-rtg2SNPtimap_sirenhetalt
97.3451
96.4912
98.2143
66.8639
5525511
100.0000
ltrigg-rtg2SNPtisegduphomalt
99.7804
99.9734
99.5881
87.6176
7503274963131
100.0000
ltrigg-rtg2SNPtv*hetalt
99.2565
99.5408
98.9738
40.5020
867486899
100.0000
ltrigg-rtg2SNPtvHG002complexvarhetalt
99.0410
99.6774
98.4127
37.6238
309131055
100.0000
ltrigg-rtg2SNPtvHG002complexvarhomalt
99.9174
99.8549
99.9800
22.4289
94973138950011919
100.0000
ltrigg-rtg2SNPtvHG002compoundhethomalt
99.4361
98.9079
99.9699
40.5831
335137332111
100.0000
ltrigg-rtg2SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.7866
99.5939
99.9801
57.0879
10056411003622
100.0000
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
94.1176
100.0000
88.8889
88.7500
1501622
100.0000
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
94.1176
100.0000
88.8889
88.7500
1501622
100.0000
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.8729
99.7825
99.9635
34.6365
27526274111
100.0000
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.8472
99.7712
99.9233
30.6546
13083130211
100.0000
ltrigg-rtg2SNPtvmap_sirenhetalt
97.5000
96.2963
98.7342
67.4897
7837811
100.0000
ltrigg-rtg2SNPtvsegduphomalt
99.6765
99.9382
99.4161
89.5171
3236232351919
100.0000
mlin-fermikitINDEL*func_cdshomalt
99.5595
100.0000
99.1228
33.5277
226022622
100.0000
mlin-fermikitINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
82.5569
70.6298
99.3305
60.9945
108894528109797474
100.0000
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
79.1393
65.8683
99.1071
71.1340
1105711111
100.0000
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
87.7721
78.5408
99.4624
73.8764
1835018511
100.0000
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
66.6667
66.6667
66.6667
97.8873
21211
100.0000
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
66.6667
100.0000
50.0000
95.8333
10111
100.0000
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
80.9710
68.2936
99.4281
31.4166
7584352176494444
100.0000
mlin-fermikitINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
83.2118
71.5131
99.4866
35.3667
7491298475583939
100.0000
mlin-fermikitINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
70.2479
94.7075
55.8292
51.1236
34019340269269
100.0000
mlin-fermikitINDEL*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
92.9377
87.2897
99.3671
71.9361
4676847133
100.0000
mlin-fermikitINDEL*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
66.6667
56.2500
81.8182
99.8908
97922
100.0000
mlin-fermikitINDEL*lowcmp_SimpleRepeat_homopolymer_gt10homalt
68.8406
90.4762
55.5556
99.9404
192201616
100.0000
mlin-fermikitINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
81.8304
69.7614
98.9490
45.2532
187181118832020
100.0000
mlin-fermikitINDEL*lowcmp_SimpleRepeat_triTR_11to50hetalt
86.5177
76.8147
99.0264
30.1942
70921471277
100.0000
mlin-fermikitINDEL*lowcmp_SimpleRepeat_triTR_51to200hetalt
54.3418
37.6000
97.9592
37.9747
47784811
100.0000
mlin-fermikitINDEL*tech_badpromoters*
94.6667
93.4211
95.9459
50.0000
7157133
100.0000
mlin-fermikitINDEL*tech_badpromotershet
93.3333
89.7436
97.2222
44.6154
3543511
100.0000
mlin-fermikitINDEL*tech_badpromotershomalt
97.0588
100.0000
94.2857
54.5455
3303322
100.0000