PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
80801-80850 / 86044 show all
ltrigg-rtg2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
98.7188
97.6759
99.7842
42.6822
453910846231010
100.0000
ltrigg-rtg2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
99.1258
98.3867
99.8761
42.1136
396465403255
100.0000
ltrigg-rtg2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
98.6787
97.6320
99.7480
46.7338
465911347501212
100.0000
ltrigg-rtg2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
98.5556
97.4729
99.6627
53.9495
574714959092020
100.0000
ltrigg-rtg2INDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
98.9430
98.1340
99.7654
46.0565
373471382899
100.0000
ltrigg-rtg2INDELI1_5lowcmp_SimpleRepeat_diTR_11to50homalt
98.2998
97.1631
99.4633
61.2613
5481655633
100.0000
ltrigg-rtg2INDELI1_5lowcmp_SimpleRepeat_diTR_51to200*
91.0540
83.9806
99.4286
47.7612
1733317411
100.0000
ltrigg-rtg2INDELI1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
90.9072
83.7989
99.3333
37.2385
1502914911
100.0000
ltrigg-rtg2INDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10hetalt
98.2886
97.4684
99.1228
83.5498
308833933
100.0000
ltrigg-rtg2INDELI1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
99.0806
98.7622
99.4012
57.1167
111714116277
100.0000
ltrigg-rtg2INDELI1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
98.1641
97.2350
99.1111
53.7037
211622322
100.0000
ltrigg-rtg2INDELI1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
99.5230
99.3610
99.6855
53.7118
311231711
100.0000
ltrigg-rtg2INDELI1_5segduphomalt
99.6825
100.0000
99.3671
91.5023
473047133
100.0000
ltrigg-rtg2INDELI6_15HG002complexvarhetalt
96.8057
94.1946
99.5656
57.9927
115271114655
100.0000
ltrigg-rtg2INDELI6_15HG002compoundhethomalt
53.2110
93.5484
37.1795
63.3803
292294949
100.0000
ltrigg-rtg2INDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
95.9057
92.6415
99.4083
55.1724
4913950433
100.0000
ltrigg-rtg2INDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
95.7552
96.6102
94.9153
68.6170
5725633
100.0000
ltrigg-rtg2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
96.3154
93.3884
99.4318
53.2537
3392435022
100.0000
ltrigg-rtg2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
89.5349
91.6667
87.5000
70.7317
2222133
100.0000
ltrigg-rtg2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
97.1429
96.6825
97.6077
61.5809
204720455
100.0000
ltrigg-rtg2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.1262
97.3404
98.9247
60.0858
183518422
100.0000
ltrigg-rtg2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.0671
97.7492
98.3871
62.2871
304730555
100.0000
ltrigg-rtg2INDELI6_15lowcmp_SimpleRepeat_diTR_11to50homalt
98.6797
98.6928
98.6667
68.1529
151214822
100.0000
ltrigg-rtg2INDELI6_15lowcmp_SimpleRepeat_diTR_51to200*
90.5882
83.6957
98.7179
55.6818
77157711
100.0000
ltrigg-rtg2INDELI6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
91.6129
85.5422
98.6111
44.6154
71127111
100.0000
ltrigg-rtg2INDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10*
97.3899
96.1290
98.6842
79.5699
149615022
100.0000
ltrigg-rtg2INDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
95.3752
93.1818
97.6744
77.3684
4134211
100.0000
ltrigg-rtg2INDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
97.9796
97.9592
98.0000
77.3756
4814911
100.0000
ltrigg-rtg2INDELI6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.0306
96.7239
99.3730
52.6355
6202163444
100.0000
ltrigg-rtg2INDELI6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
97.6562
96.0265
99.3421
59.0296
145615111
100.0000
ltrigg-rtg2INDELI6_15map_sirenhomalt
97.1812
96.6667
97.7011
75.2841
8738522
100.0000
ltrigg-rtg2INDELI6_15segdup*
98.5505
97.7143
99.4012
90.2624
171416611
100.0000
ltrigg-rtg2INDELI6_15segduphet
98.1509
97.5904
98.7179
90.0383
8127711
100.0000
ltrigg-rtg2SNP**hetalt
99.2565
99.5408
98.9738
40.5020
867486899
100.0000
ltrigg-rtg2SNP*HG002complexvarhetalt
99.0410
99.6774
98.4127
37.6238
309131055
100.0000
ltrigg-rtg2SNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.0190
98.1121
99.9429
58.3888
171533175011
100.0000
ltrigg-rtg2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
94.1176
100.0000
88.8889
88.7500
1501622
100.0000
ltrigg-rtg2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
94.1176
100.0000
88.8889
88.7500
1501622
100.0000
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_quadTR_51to200homalt
81.8879
70.7317
97.2222
86.6171
29123511
100.0000
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.8903
99.8539
99.9268
27.2049
27344273022
100.0000
ltrigg-rtg2SNP*map_l250_m0_e0homalt
99.4431
99.3641
99.5223
90.1798
625462533
100.0000
ltrigg-rtg2SNP*map_l250_m1_e0homalt
99.6541
99.4316
99.8777
84.3152
244914244933
100.0000
ltrigg-rtg2SNP*map_l250_m2_e0homalt
99.6642
99.4415
99.8878
85.5934
267115267133
100.0000
ltrigg-rtg2SNP*map_l250_m2_e1homalt
99.6681
99.4481
99.8891
85.6712
270315270333
100.0000
ltrigg-rtg2SNP*map_sirenhetalt
97.5000
96.2963
98.7342
67.4897
7837811
100.0000
ltrigg-rtg2SNP*segduphomalt
99.7490
99.9628
99.5362
88.2598
107394107315050
100.0000
ltrigg-rtg2SNPti*hetalt
99.1449
99.4845
98.8075
41.3000
579358077
100.0000
ltrigg-rtg2SNPtiHG002complexvarhetalt
99.0419
99.5169
98.5714
37.5000
206120733
100.0000
ltrigg-rtg2SNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
98.9695
98.0392
99.9176
57.2234
120024121311
100.0000
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
92.8571
100.0000
86.6667
86.3636
1201322
100.0000