PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
80751-80800 / 86044 show all
qzeng-customINDEL*lowcmp_SimpleRepeat_triTR_51to200homalt
89.9387
93.6170
86.5385
51.8519
4434577
100.0000
qzeng-customINDEL*tech_badpromotershomalt
96.8718
96.9697
96.7742
55.7143
3213011
100.0000
qzeng-customINDELC6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
0.0000
0.0000
95.6522
00011
100.0000
qzeng-customINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
0.0000
0.0000
66.6667
98.1250
00211
100.0000
qzeng-customINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
0.0000
0.0000
97.9592
00011
100.0000
qzeng-customINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
0.0000
0.0000
92.3077
00011
100.0000
qzeng-customINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
0.0000
0.0000
66.6667
95.3846
00211
100.0000
qzeng-customINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
0.0000
0.0000
66.6667
96.9072
00211
100.0000
qzeng-customINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
0.0000
0.0000
66.6667
98.1250
00211
100.0000
qzeng-customINDELC6_15lowcmp_SimpleRepeat_triTR_51to200*
0.0000
0.0000
50.0000
00011
100.0000
qzeng-customINDELC6_15lowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
0.0000
0.0000
00011
100.0000
qzeng-customINDELC6_15map_siren*
0.0000
0.0000
75.0000
97.3154
00311
100.0000
qzeng-customINDELC6_15map_sirenhomalt
0.0000
0.0000
95.6522
00011
100.0000
qzeng-customINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200homalt
88.0000
84.6154
91.6667
47.8261
1121111
100.0000
qzeng-customINDELD1_5*hetalt
89.9947
83.6798
97.3404
85.7251
8573167218355
100.0000
qzeng-customINDELD1_5HG002complexvarhetalt
93.1197
88.3876
98.3871
70.2875
119515718333
100.0000
qzeng-customINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
91.0385
86.3032
96.3235
58.6123
6491036552525
100.0000
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.0261
98.4496
99.6094
60.3101
254425511
100.0000
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
87.6651
82.3219
93.7500
55.0802
312673152121
100.0000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_diTR_51to200homalt
39.1304
25.3521
85.7143
57.1429
18531833
100.0000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200homalt
92.5203
90.3553
94.7917
56.5611
178191821010
100.0000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.4721
99.4737
99.4705
36.2584
13237131577
100.0000
qzeng-customINDELD1_5map_l100_m0_e0homalt
86.1563
76.3566
98.8417
82.7793
1976125633
100.0000
qzeng-customINDELD1_5map_l100_m1_e0homalt
90.3416
83.2770
98.7159
78.5468
4939961588
100.0000
qzeng-customINDELD1_5map_l100_m2_e0homalt
90.6644
83.7971
98.7578
79.4118
5129963688
100.0000
qzeng-customINDELD1_5map_l100_m2_e1homalt
90.7434
84.0323
98.6196
79.5931
5219964399
100.0000
qzeng-customINDELD1_5map_l125_m0_e0homalt
83.6672
72.2973
99.2806
87.5224
1074113811
100.0000
qzeng-customINDELD1_5map_l125_m1_e0homalt
86.1830
76.7908
98.1928
83.9614
2688132666
100.0000
qzeng-customINDELD1_5map_l125_m2_e0homalt
86.4651
77.1978
98.2609
84.8218
2818333966
100.0000
qzeng-customINDELD1_5map_l125_m2_e1homalt
86.7834
77.6882
98.2906
84.8576
2898334566
100.0000
qzeng-customINDELD1_5map_l150_m0_e0homalt
79.8653
67.0588
98.7179
91.2752
57287711
100.0000
qzeng-customINDELD1_5map_l150_m1_e0homalt
84.7106
74.5614
98.0583
87.3775
1705820244
100.0000
qzeng-customINDELD1_5map_l150_m2_e0homalt
85.4395
75.6198
98.1900
87.8035
1835921744
100.0000
qzeng-customINDELD1_5map_l150_m2_e1homalt
85.8330
76.2097
98.2379
87.7562
1895922344
100.0000
qzeng-customINDELD1_5map_l250_m0_e0*
83.4242
73.9130
95.7447
98.9135
34124522
100.0000
qzeng-customINDELD1_5map_l250_m0_e0het
85.7732
78.7879
94.1176
99.0950
2673222
100.0000
qzeng-customINDELD1_5map_l250_m1_e0homalt
81.8253
70.1754
98.1132
94.2888
40175211
100.0000
qzeng-customINDELD1_5map_l250_m2_e0homalt
82.8773
71.6667
98.2456
94.4714
43175611
100.0000
qzeng-customINDELD1_5map_l250_m2_e1homalt
82.8881
71.6667
98.2759
94.5283
43175711
100.0000
qzeng-customINDELD1_5map_sirenhomalt
94.1879
89.8116
99.0126
74.9663
104911911031111
100.0000
ltrigg-rtg2INDELI16_PLUSmap_sirenhomalt
73.6842
66.6667
82.3529
70.6897
1471433
100.0000
ltrigg-rtg2INDELI1_5*hetalt
98.3546
97.0076
99.7395
72.4903
10860335111052929
100.0000
ltrigg-rtg2INDELI1_5HG002complexvarhetalt
98.0883
96.9293
99.2754
77.2008
16735319181414
100.0000
ltrigg-rtg2INDELI1_5HG002compoundhethetalt
98.4111
97.0028
99.8609
64.1248
10842335107681515
100.0000
ltrigg-rtg2INDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
96.1107
93.3110
99.0836
51.0924
8376086588
100.0000
ltrigg-rtg2INDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
98.9113
98.1812
99.6524
74.7228
583010860202121
100.0000
ltrigg-rtg2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
98.5556
97.4729
99.6627
53.9495
574714959092020
100.0000
ltrigg-rtg2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
95.8706
95.2381
96.5116
64.1667
8048333
100.0000
ltrigg-rtg2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
98.6916
98.2143
99.1736
83.4247
110212011
100.0000
ltrigg-rtg2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
96.0116
93.0380
99.1817
48.3080
5884460655
100.0000