PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
80701-80750 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | SNP | tv | map_l125_m1_e0 | homalt | 99.4262 | 99.0614 | 99.7937 | 67.2577 | 5805 | 55 | 5805 | 12 | 12 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l125_m2_e0 | hetalt | 95.2381 | 100.0000 | 90.9091 | 86.5854 | 30 | 0 | 30 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l125_m2_e0 | homalt | 99.4329 | 99.0693 | 99.7991 | 69.7738 | 5961 | 56 | 5961 | 12 | 12 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l125_m2_e1 | hetalt | 95.2381 | 100.0000 | 90.9091 | 86.6397 | 30 | 0 | 30 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l125_m2_e1 | homalt | 99.4382 | 99.0780 | 99.8010 | 69.8334 | 6018 | 56 | 6018 | 12 | 12 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l150_m0_e0 | hetalt | 75.0000 | 100.0000 | 60.0000 | 94.1176 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l150_m0_e0 | homalt | 98.3607 | 97.1386 | 99.6139 | 76.6034 | 1290 | 38 | 1290 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l150_m1_e0 | hetalt | 93.0233 | 100.0000 | 86.9565 | 87.1508 | 20 | 0 | 20 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l150_m1_e0 | homalt | 99.2485 | 98.7329 | 99.7695 | 71.6659 | 3896 | 50 | 3896 | 9 | 9 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l150_m2_e0 | hetalt | 93.0233 | 100.0000 | 86.9565 | 88.7255 | 20 | 0 | 20 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l150_m2_e0 | homalt | 99.2738 | 98.7754 | 99.7773 | 74.0315 | 4033 | 50 | 4033 | 9 | 9 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l150_m2_e1 | hetalt | 93.0233 | 100.0000 | 86.9565 | 88.8889 | 20 | 0 | 20 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l150_m2_e1 | homalt | 99.2828 | 98.7905 | 99.7801 | 74.0325 | 4084 | 50 | 4084 | 9 | 9 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l250_m0_e0 | homalt | 96.2766 | 93.7824 | 98.9071 | 92.7981 | 181 | 12 | 181 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l250_m1_e0 | homalt | 98.2249 | 96.9626 | 99.5204 | 86.9197 | 830 | 26 | 830 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l250_m2_e0 | homalt | 98.3252 | 97.1185 | 99.5624 | 88.0052 | 910 | 27 | 910 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l250_m2_e1 | homalt | 98.2869 | 97.0402 | 99.5662 | 88.1078 | 918 | 28 | 918 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_siren | hetalt | 98.1818 | 100.0000 | 96.4286 | 79.8561 | 81 | 0 | 81 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | segdup | homalt | 99.7378 | 99.8456 | 99.6302 | 90.4939 | 3233 | 5 | 3233 | 12 | 12 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | tech_badpromoters | * | 98.6111 | 98.6111 | 98.6111 | 48.9362 | 71 | 1 | 71 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | tech_badpromoters | het | 98.5075 | 100.0000 | 97.0588 | 39.2857 | 33 | 0 | 33 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_l250_m2_e0 | homalt | 99.3103 | 98.7993 | 99.8267 | 86.8804 | 1728 | 21 | 1728 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_l250_m2_e1 | homalt | 99.3193 | 98.8149 | 99.8290 | 86.9124 | 1751 | 21 | 1751 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_siren | hetalt | 92.5926 | 87.7193 | 98.0392 | 75.4808 | 50 | 7 | 50 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | segdup | homalt | 99.7406 | 99.8934 | 99.5882 | 88.2312 | 7497 | 8 | 7497 | 31 | 31 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | * | hetalt | 98.9643 | 98.7371 | 99.1926 | 47.1341 | 860 | 11 | 860 | 7 | 7 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | HG002complexvar | hetalt | 98.7097 | 98.7097 | 98.7097 | 40.9524 | 306 | 4 | 306 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.2963 | 100.0000 | 92.8571 | 79.7101 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 90.0000 | 87.8049 | 92.3077 | 89.8964 | 36 | 5 | 36 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 96.3257 | 95.6607 | 97.0000 | 82.2127 | 485 | 22 | 485 | 15 | 15 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 96.7880 | 96.3753 | 97.2043 | 81.1588 | 452 | 17 | 452 | 13 | 13 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.1773 | 98.9247 | 99.4312 | 56.1924 | 1748 | 19 | 1748 | 10 | 10 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 80.0000 | 69.2308 | 94.7368 | 94.8925 | 18 | 8 | 18 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 82.3529 | 77.7778 | 87.5000 | 88.8889 | 7 | 2 | 7 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 62.5000 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4376 | 99.3474 | 99.5280 | 38.8679 | 2740 | 18 | 2741 | 13 | 13 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7712 | 99.7712 | 99.7712 | 36.2974 | 1308 | 3 | 1308 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m0_e0 | hetalt | 90.3226 | 87.5000 | 93.3333 | 79.1667 | 14 | 2 | 14 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m1_e0 | hetalt | 90.9091 | 85.3659 | 97.2222 | 77.7778 | 35 | 6 | 35 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e0 | hetalt | 91.1392 | 85.7143 | 97.2973 | 79.7814 | 36 | 6 | 36 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e1 | hetalt | 91.3580 | 86.0465 | 97.3684 | 79.4595 | 37 | 6 | 37 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l250_m0_e0 | homalt | 98.9583 | 98.4456 | 99.4764 | 91.6630 | 190 | 3 | 190 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l250_m1_e0 | homalt | 99.2958 | 98.8318 | 99.7642 | 85.6708 | 846 | 10 | 846 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l250_m2_e0 | homalt | 99.3569 | 98.9328 | 99.7847 | 86.9321 | 927 | 10 | 927 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l250_m2_e1 | homalt | 99.3631 | 98.9429 | 99.7868 | 87.0245 | 936 | 10 | 936 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_siren | hetalt | 93.5065 | 88.8889 | 98.6301 | 75.8278 | 72 | 9 | 72 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | segdup | homalt | 99.6917 | 99.8765 | 99.5077 | 90.2309 | 3234 | 4 | 3234 | 16 | 16 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | tech_badpromoters | homalt | 98.7342 | 100.0000 | 97.5000 | 54.5455 | 39 | 0 | 39 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 78.0161 | 64.7448 | 98.1308 | 54.0773 | 1763 | 960 | 105 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 97.4130 | 95.2329 | 99.6951 | 36.9231 | 879 | 44 | 327 | 1 | 1 | 100.0000 | |