PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
80651-80700 / 86044 show all
rpoplin-dv42SNP*map_l150_m2_e1hetalt
93.0233
100.0000
86.9565
88.8889
2002033
100.0000
rpoplin-dv42SNP*map_l250_m0_e0homalt
97.8208
96.3434
99.3443
91.6882
6062360644
100.0000
rpoplin-dv42SNP*map_l250_m1_e0homalt
98.6481
97.7670
99.5453
86.6597
24085524081111
100.0000
rpoplin-dv42SNP*map_l250_m2_e0homalt
98.7237
97.9151
99.5458
87.7612
26305626301212
100.0000
rpoplin-dv42SNP*map_l250_m2_e1homalt
98.7018
97.9029
99.5138
87.8305
26615726611313
100.0000
rpoplin-dv42SNP*map_sirenhetalt
98.1818
100.0000
96.4286
79.8561
8108133
100.0000
rpoplin-dv42SNP*segduphomalt
99.8140
99.8883
99.7398
89.1939
1073112107312828
100.0000
rpoplin-dv42SNP*tech_badpromoters*
98.7261
98.7261
98.7261
46.9595
155215522
100.0000
rpoplin-dv42SNP*tech_badpromotershet
98.7013
98.7013
98.7013
42.1053
7617611
100.0000
rpoplin-dv42SNP*tech_badpromotershomalt
98.7500
98.7500
98.7500
50.9202
7917911
100.0000
rpoplin-dv42SNPti*hetalt
99.4012
99.8282
98.9779
50.2542
581158166
100.0000
rpoplin-dv42SNPtiHG002complexvarhetalt
99.0385
99.5169
98.5646
34.6875
206120633
100.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.7923
99.6445
99.9406
65.1625
16826168211
100.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.9282
99.9043
99.9521
44.5722
62626626233
100.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.9262
99.9262
99.9262
45.5021
40623406233
100.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9248
99.9248
99.9248
37.2719
39843398433
100.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.9299
99.9299
99.9299
28.6857
14261142611
100.0000
rpoplin-dv42SNPtimap_l100_m0_e0hetalt
93.3333
100.0000
87.5000
82.4176
1401422
100.0000
rpoplin-dv42SNPtimap_l100_m1_e0hetalt
96.6667
100.0000
93.5484
82.7778
2902922
100.0000
rpoplin-dv42SNPtimap_l100_m2_e0hetalt
96.7742
100.0000
93.7500
84.0796
3003022
100.0000
rpoplin-dv42SNPtimap_l100_m2_e1hetalt
96.8750
100.0000
93.9394
83.9024
3103122
100.0000
rpoplin-dv42SNPtimap_l125_m0_e0hetalt
88.8889
100.0000
80.0000
86.3014
80822
100.0000
rpoplin-dv42SNPtimap_l125_m1_e0hetalt
96.0000
100.0000
92.3077
81.6901
2402422
100.0000
rpoplin-dv42SNPtimap_l125_m2_e0hetalt
96.0000
100.0000
92.3077
84.4311
2402422
100.0000
rpoplin-dv42SNPtimap_l125_m2_e1hetalt
96.0000
100.0000
92.3077
84.5238
2402422
100.0000
rpoplin-dv42SNPtimap_l150_m0_e0hetalt
85.7143
100.0000
75.0000
92.8571
30311
100.0000
rpoplin-dv42SNPtimap_l150_m1_e0hetalt
93.7500
100.0000
88.2353
85.0877
1501522
100.0000
rpoplin-dv42SNPtimap_l150_m2_e0hetalt
93.7500
100.0000
88.2353
87.3134
1501522
100.0000
rpoplin-dv42SNPtimap_l150_m2_e1hetalt
93.7500
100.0000
88.2353
87.5912
1501522
100.0000
rpoplin-dv42SNPtimap_l250_m0_e0homalt
98.4936
97.4771
99.5316
91.1005
4251142522
100.0000
rpoplin-dv42SNPtimap_l250_m1_e0homalt
98.8722
98.1954
99.5584
86.5187
157829157877
100.0000
rpoplin-dv42SNPtimap_l250_m2_e0homalt
98.9359
98.3419
99.5370
87.6280
172029172088
100.0000
rpoplin-dv42SNPtimap_l250_m2_e1homalt
98.9217
98.3634
99.4863
87.6793
174329174399
100.0000
rpoplin-dv42SNPtimap_sirenhetalt
98.2759
100.0000
96.6102
78.7004
5705722
100.0000
rpoplin-dv42SNPtisegduphomalt
99.8469
99.9067
99.7871
88.5156
7498774981616
100.0000
rpoplin-dv42SNPtitech_badpromoters*
98.8235
98.8235
98.8235
45.1613
8418411
100.0000
rpoplin-dv42SNPtitech_badpromotershomalt
98.7952
100.0000
97.6190
46.1538
4104111
100.0000
rpoplin-dv42SNPtv*hetalt
99.4854
99.8852
99.0888
49.8858
870187088
100.0000
rpoplin-dv42SNPtvHG002complexvarhetalt
99.1974
99.6774
98.7220
36.2525
309130944
100.0000
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_quadTR_51to200*
97.6190
97.6190
97.6190
89.3401
4114111
100.0000
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_quadTR_51to200homalt
92.3077
100.0000
85.7143
92.0455
60611
100.0000
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.9420
99.9130
99.9710
37.2906
34473344311
100.0000
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.9532
99.9532
99.9531
38.2523
21371213311
100.0000
rpoplin-dv42SNPtvmap_l100_m0_e0hetalt
91.4286
100.0000
84.2105
84.6774
1601633
100.0000
rpoplin-dv42SNPtvmap_l100_m1_e0hetalt
96.4706
100.0000
93.1818
83.5821
4104133
100.0000
rpoplin-dv42SNPtvmap_l100_m2_e0hetalt
96.5517
100.0000
93.3333
85.0993
4204233
100.0000
rpoplin-dv42SNPtvmap_l100_m2_e1hetalt
96.6292
100.0000
93.4783
84.9673
4304333
100.0000
rpoplin-dv42SNPtvmap_l125_m0_e0hetalt
85.7143
100.0000
75.0000
88.4615
90933
100.0000
rpoplin-dv42SNPtvmap_l125_m0_e0homalt
98.8647
98.0189
99.7251
70.7294
217744217766
100.0000
rpoplin-dv42SNPtvmap_l125_m1_e0hetalt
95.2381
100.0000
90.9091
84.5794
3003033
100.0000