PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
80251-80300 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.1908 | 91.4842 | 99.2105 | 70.2428 | 376 | 35 | 377 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9411 | 99.9607 | 99.9214 | 54.0979 | 10174 | 4 | 10174 | 8 | 8 | 100.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.5421 | 97.3208 | 99.7944 | 32.2970 | 1453 | 40 | 1456 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9319 | 99.9727 | 99.8911 | 50.1493 | 3665 | 1 | 3668 | 4 | 4 | 100.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 99.2405 | 99.4924 | 98.9899 | 56.9565 | 196 | 1 | 196 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3478 | 98.9177 | 99.7817 | 28.6604 | 457 | 5 | 457 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.8571 | 100.0000 | 86.6667 | 55.8824 | 13 | 0 | 13 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l100_m0_e0 | homalt | 99.0291 | 98.8372 | 99.2218 | 82.5526 | 255 | 3 | 255 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.3232 | 99.1554 | 99.4915 | 81.9902 | 587 | 5 | 587 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.3443 | 99.1817 | 99.5074 | 82.7381 | 606 | 5 | 606 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.3538 | 99.1935 | 99.5146 | 82.8286 | 615 | 5 | 615 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l125_m0_e0 | homalt | 98.6486 | 98.6486 | 98.6486 | 85.9449 | 146 | 2 | 146 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l125_m1_e0 | homalt | 99.2826 | 99.1404 | 99.4253 | 84.3102 | 346 | 3 | 346 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.3122 | 99.1758 | 99.4490 | 85.1837 | 361 | 3 | 361 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.3271 | 99.1935 | 99.4609 | 85.1719 | 369 | 3 | 369 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l150_m0_e0 | homalt | 98.8235 | 98.8235 | 98.8235 | 89.2812 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l150_m1_e0 | homalt | 99.1189 | 98.6842 | 99.5575 | 86.5075 | 225 | 3 | 225 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l150_m2_e0 | homalt | 99.1701 | 98.7603 | 99.5833 | 87.3284 | 239 | 3 | 239 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.9899 | 98.7903 | 99.1903 | 87.2483 | 245 | 3 | 245 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_siren | homalt | 99.5293 | 99.4863 | 99.5723 | 80.0137 | 1162 | 6 | 1164 | 5 | 5 | 100.0000 | |
| jli-custom | INDEL | D1_5 | segdup | homalt | 99.8609 | 100.0000 | 99.7222 | 94.3074 | 359 | 0 | 359 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | HG002complexvar | hetalt | 85.1780 | 74.4939 | 99.4398 | 52.4000 | 184 | 63 | 355 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.1485 | 96.6825 | 97.6190 | 55.2239 | 204 | 7 | 205 | 5 | 5 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 88.1960 | 96.5132 | 81.1986 | 71.1330 | 692 | 25 | 691 | 160 | 160 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 91.2274 | 96.9697 | 86.1272 | 74.9275 | 448 | 14 | 447 | 72 | 72 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 77.5000 | 97.6378 | 64.2487 | 59.3684 | 124 | 3 | 124 | 69 | 69 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 91.3043 | 91.3043 | 91.3043 | 88.3838 | 21 | 2 | 21 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 70.4000 | 64.7059 | 77.1930 | 96.8784 | 44 | 24 | 44 | 13 | 13 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 69.4444 | 56.8182 | 89.2857 | 94.6463 | 25 | 19 | 25 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 68.4211 | 86.6667 | 56.5217 | 98.1437 | 13 | 2 | 13 | 10 | 10 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 90.3980 | 95.0820 | 86.1538 | 71.6157 | 58 | 3 | 56 | 9 | 9 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 67.4157 | 65.2174 | 69.7674 | 63.8655 | 30 | 16 | 30 | 13 | 13 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 44.1176 | 75.0000 | 31.2500 | 71.9298 | 6 | 2 | 5 | 11 | 11 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.8571 | 100.0000 | 86.6667 | 62.5000 | 13 | 0 | 13 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | * | hetalt | 80.4314 | 67.3987 | 99.7126 | 64.5076 | 6905 | 3340 | 6939 | 20 | 20 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | HG002complexvar | hetalt | 89.3834 | 81.7308 | 98.6171 | 71.1327 | 1105 | 247 | 1141 | 16 | 16 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | HG002compoundhet | hetalt | 80.3857 | 67.3160 | 99.7534 | 60.0394 | 6877 | 3339 | 6877 | 17 | 17 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | func_cds | homalt | 99.3289 | 100.0000 | 98.6667 | 21.0526 | 74 | 0 | 74 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 56.8303 | 39.7366 | 99.7333 | 37.6559 | 724 | 1098 | 748 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 81.8182 | 81.8182 | 81.8182 | 99.0886 | 9 | 2 | 9 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 99.1667 | 2 | 0 | 2 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 82.9460 | 70.9983 | 99.7285 | 65.0277 | 6600 | 2696 | 6611 | 18 | 18 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 78.2556 | 64.3957 | 99.7182 | 32.7011 | 5983 | 3308 | 6015 | 17 | 17 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 90.0000 | 90.0000 | 90.0000 | 99.1349 | 9 | 1 | 9 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 80.0000 | 100.0000 | 66.6667 | 99.3534 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 97.8845 | 98.5348 | 97.2426 | 75.8758 | 538 | 8 | 529 | 15 | 15 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.9436 | 97.8320 | 98.0556 | 80.5300 | 361 | 8 | 353 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 57.3175 | 40.2014 | 99.8145 | 34.3484 | 519 | 772 | 538 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 98.0769 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 94.1176 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||