PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
79951-80000 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.5155 | 98.1707 | 94.9153 | 85.9857 | 161 | 3 | 112 | 6 | 6 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.7815 | 94.0000 | 99.7326 | 35.9589 | 329 | 21 | 373 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.5124 | 96.0784 | 98.9899 | 59.9190 | 98 | 4 | 98 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.1818 | 89.1304 | 97.6190 | 65.2893 | 41 | 5 | 41 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 78.9474 | 75.0000 | 83.3333 | 88.8889 | 6 | 2 | 5 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | HG002compoundhet | homalt | 90.5363 | 98.6254 | 83.6735 | 73.7366 | 287 | 4 | 287 | 56 | 56 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.4189 | 97.8723 | 96.9697 | 59.4335 | 736 | 16 | 736 | 23 | 23 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8037 | 99.8082 | 99.7991 | 72.6490 | 21857 | 42 | 21857 | 44 | 44 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.4624 | 99.5933 | 99.3319 | 58.5091 | 8326 | 34 | 8326 | 56 | 56 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 96.5879 | 97.0976 | 96.0836 | 58.4599 | 368 | 11 | 368 | 15 | 15 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.2980 | 99.5114 | 99.0854 | 41.3691 | 5092 | 25 | 5092 | 47 | 47 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.5170 | 99.7054 | 99.3293 | 39.8437 | 4739 | 14 | 4739 | 32 | 32 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.3410 | 99.5071 | 99.1754 | 50.3830 | 5653 | 28 | 5653 | 47 | 47 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.4624 | 99.5933 | 99.3319 | 58.5091 | 8326 | 34 | 8326 | 56 | 56 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.6415 | 99.7240 | 99.5592 | 34.7388 | 7227 | 20 | 7227 | 32 | 32 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 84.5638 | 88.7324 | 80.7692 | 54.9133 | 63 | 8 | 63 | 15 | 15 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9017 | 99.8231 | 99.9803 | 53.8406 | 10160 | 18 | 10160 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8909 | 99.8909 | 99.8909 | 48.7917 | 3662 | 4 | 3662 | 4 | 4 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 99.2405 | 99.4924 | 98.9899 | 54.3779 | 196 | 1 | 196 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.8571 | 100.0000 | 86.6667 | 53.1250 | 13 | 0 | 13 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m0_e0 | homalt | 99.4175 | 99.2248 | 99.6109 | 81.1722 | 256 | 2 | 256 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.5766 | 99.3243 | 99.8302 | 80.5031 | 588 | 4 | 588 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.5898 | 99.3453 | 99.8355 | 81.4067 | 607 | 4 | 607 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.5958 | 99.3548 | 99.8379 | 81.4993 | 616 | 4 | 616 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m0_e0 | homalt | 98.9831 | 98.6486 | 99.3197 | 85.1215 | 146 | 2 | 146 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m1_e0 | homalt | 99.4253 | 99.1404 | 99.7118 | 83.2690 | 346 | 3 | 346 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.4490 | 99.1758 | 99.7238 | 84.2814 | 361 | 3 | 361 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.4609 | 99.1935 | 99.7297 | 84.2620 | 369 | 3 | 369 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m0_e0 | homalt | 98.8235 | 98.8235 | 98.8235 | 88.5445 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m1_e0 | homalt | 99.1189 | 98.6842 | 99.5575 | 85.6690 | 225 | 3 | 225 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m2_e0 | homalt | 99.1701 | 98.7603 | 99.5833 | 86.5697 | 239 | 3 | 239 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m2_e1 | homalt | 99.1903 | 98.7903 | 99.5935 | 86.5058 | 245 | 3 | 245 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_siren | homalt | 99.7001 | 99.5719 | 99.8286 | 78.3166 | 1163 | 5 | 1165 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | HG002complexvar | homalt | 99.5730 | 99.7434 | 99.4032 | 61.2103 | 1166 | 3 | 1166 | 7 | 7 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | HG002compoundhet | homalt | 53.3333 | 100.0000 | 36.3636 | 67.8049 | 24 | 0 | 24 | 42 | 42 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.0450 | 87.0668 | 99.9048 | 30.8983 | 2060 | 306 | 2098 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.6018 | 99.6976 | 99.5062 | 56.7205 | 3627 | 11 | 3627 | 18 | 18 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.0000 | 90.9091 | 99.4764 | 75.1625 | 190 | 19 | 190 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.6502 | 90.5512 | 99.1379 | 77.1203 | 115 | 12 | 115 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.0973 | 98.3085 | 99.8990 | 63.5493 | 988 | 17 | 989 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.6831 | 97.5694 | 99.8224 | 66.3479 | 562 | 14 | 562 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6516 | 99.4206 | 99.8837 | 61.5213 | 858 | 5 | 859 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4851 | 99.1786 | 99.7934 | 64.4118 | 483 | 4 | 483 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.4487 | 86.0070 | 99.9334 | 30.1720 | 1469 | 239 | 1501 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.2809 | 97.0252 | 93.5982 | 46.7059 | 424 | 13 | 424 | 29 | 29 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.9167 | 99.3224 | 98.5143 | 47.0103 | 2785 | 19 | 2785 | 42 | 42 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.5997 | 99.7468 | 99.4531 | 47.3533 | 2364 | 6 | 2364 | 13 | 13 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.0239 | 99.3681 | 98.6821 | 49.3000 | 3145 | 20 | 3145 | 42 | 42 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.3868 | 99.5904 | 99.1841 | 39.0236 | 1945 | 8 | 1945 | 16 | 16 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 84.7448 | 77.6461 | 93.2722 | 41.8494 | 917 | 264 | 915 | 66 | 66 | 100.0000 | |