PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
79701-79750 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m2_e1 | het | 82.7586 | 75.0000 | 92.3077 | 94.5378 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 98.9583 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 98.3871 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m1_e0 | * | 66.6667 | 57.1429 | 80.0000 | 97.6526 | 4 | 3 | 4 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m1_e0 | het | 57.1429 | 50.0000 | 66.6667 | 97.5806 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m2_e0 | * | 71.4286 | 62.5000 | 83.3333 | 97.4359 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m2_e0 | het | 66.6667 | 60.0000 | 75.0000 | 97.0588 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m2_e1 | * | 71.4286 | 62.5000 | 83.3333 | 97.5709 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m2_e1 | het | 66.6667 | 60.0000 | 75.0000 | 97.2028 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_siren | * | 96.6443 | 94.4262 | 98.9691 | 82.7607 | 288 | 17 | 288 | 3 | 3 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_siren | het | 96.0289 | 93.0070 | 99.2537 | 83.7181 | 133 | 10 | 133 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_siren | homalt | 97.7778 | 97.7778 | 97.7778 | 83.4254 | 88 | 2 | 88 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | SNP | * | * | hetalt | 99.8277 | 99.7704 | 99.8851 | 46.7890 | 869 | 2 | 869 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | * | HG002compoundhet | homalt | 99.8980 | 99.8887 | 99.9072 | 34.7339 | 10770 | 12 | 10770 | 10 | 10 | 100.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.7742 | 100.0000 | 93.7500 | 92.7602 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.7742 | 100.0000 | 93.7500 | 92.7602 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.7825 | 99.5948 | 99.9709 | 62.1467 | 3441 | 14 | 3441 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9671 | 99.9671 | 99.9671 | 54.5909 | 6086 | 2 | 6086 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9407 | 99.9259 | 99.9555 | 36.4048 | 6740 | 5 | 6740 | 3 | 3 | 100.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 87.8049 | 97.2973 | 93.3573 | 36 | 5 | 36 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | * | segdup | homalt | 99.9395 | 99.9535 | 99.9256 | 88.8624 | 10738 | 5 | 10738 | 8 | 8 | 100.0000 | |
| hfeng-pmm3 | SNP | ti | * | hetalt | 99.7420 | 99.6564 | 99.8279 | 45.8022 | 580 | 2 | 580 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | ti | HG002complexvar | homalt | 99.9848 | 99.9773 | 99.9922 | 18.4374 | 193419 | 44 | 193409 | 15 | 15 | 100.0000 | |
| hfeng-pmm3 | SNP | ti | HG002compoundhet | homalt | 99.9256 | 99.9189 | 99.9324 | 30.4123 | 7388 | 6 | 7388 | 5 | 5 | 100.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.0000 | 100.0000 | 92.3077 | 90.2256 | 12 | 0 | 12 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.0000 | 100.0000 | 92.3077 | 90.2256 | 12 | 0 | 12 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8722 | 99.7607 | 99.9840 | 43.9807 | 6253 | 15 | 6253 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9318 | 99.9091 | 99.9545 | 42.3026 | 2199 | 2 | 2199 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9373 | 99.8997 | 99.9749 | 35.9073 | 3983 | 4 | 3983 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | ti | segdup | homalt | 99.9600 | 99.9600 | 99.9600 | 88.1690 | 7502 | 3 | 7502 | 3 | 3 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | * | hetalt | 99.8277 | 99.7704 | 99.8851 | 46.7890 | 869 | 2 | 869 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | HG002compoundhet | homalt | 99.8376 | 99.8229 | 99.8524 | 42.5250 | 3382 | 6 | 3382 | 5 | 5 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.7135 | 99.6183 | 99.8088 | 66.4313 | 522 | 2 | 522 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.9108 | 99.8613 | 99.9603 | 61.0721 | 10083 | 14 | 10083 | 4 | 4 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.7742 | 100.0000 | 93.7500 | 92.7602 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.7742 | 100.0000 | 93.7500 | 92.7602 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.6310 | 99.3209 | 99.9431 | 59.6415 | 1755 | 12 | 1755 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9871 | 100.0000 | 99.9743 | 59.4747 | 3887 | 0 | 3887 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9456 | 99.9637 | 99.9275 | 37.1096 | 2757 | 1 | 2757 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 80.5556 | 69.0476 | 96.6667 | 91.1504 | 29 | 13 | 29 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 100.0000 | 85.7143 | 92.6316 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | segdup | homalt | 99.8920 | 99.9382 | 99.8457 | 90.1933 | 3236 | 2 | 3236 | 5 | 5 | 100.0000 | |
| jlack-gatk | INDEL | * | func_cds | homalt | 99.7792 | 100.0000 | 99.5595 | 37.6374 | 226 | 0 | 226 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.0039 | 92.7039 | 99.5475 | 76.9311 | 216 | 17 | 220 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 96.0998 | 93.1818 | 99.2063 | 80.5855 | 123 | 9 | 125 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.2503 | 95.7009 | 98.8506 | 74.0943 | 512 | 23 | 516 | 6 | 6 | 100.0000 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 87.1795 | 80.9524 | 94.4444 | 99.9625 | 17 | 4 | 17 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.0087 | 96.3087 | 99.7699 | 41.5864 | 2583 | 99 | 2601 | 6 | 6 | 100.0000 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.2378 | 98.6999 | 99.7817 | 29.1570 | 911 | 12 | 914 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.4550 | 92.3423 | 96.6667 | 63.0282 | 205 | 17 | 203 | 7 | 7 | 100.0000 | |