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Explore HG002 comparison results
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Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
79101-79150 / 86044 show all | |||||||||||||||
gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 86.4554 | 77.3846 | 97.9351 | 23.6486 | 503 | 147 | 332 | 7 | 7 | 100.0000 | |
gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 97.6832 | 96.5368 | 98.8571 | 39.8625 | 446 | 16 | 173 | 2 | 2 | 100.0000 | |
gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.3995 | 99.6241 | 99.1760 | 40.3752 | 1325 | 5 | 1324 | 11 | 11 | 100.0000 | |
gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 89.5864 | 85.3333 | 94.2857 | 58.3333 | 64 | 11 | 66 | 4 | 4 | 100.0000 | |
gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 86.6667 | 100.0000 | 76.4706 | 60.4651 | 13 | 0 | 13 | 4 | 4 | 100.0000 | |
gduggal-bwafb | INDEL | D1_5 | map_l100_m0_e0 | homalt | 99.2218 | 98.8372 | 99.6094 | 86.6736 | 255 | 3 | 255 | 1 | 1 | 100.0000 | |
gduggal-bwafb | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 79.4045 | 68.0851 | 95.2381 | 93.5385 | 32 | 15 | 20 | 1 | 1 | 100.0000 | |
gduggal-bwafb | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.1521 | 98.8176 | 99.4889 | 84.7770 | 585 | 7 | 584 | 3 | 3 | 100.0000 | |
gduggal-bwafb | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 79.9308 | 68.7500 | 95.4545 | 93.6047 | 33 | 15 | 21 | 1 | 1 | 100.0000 | |
gduggal-bwafb | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.1786 | 98.8543 | 99.5050 | 85.3976 | 604 | 7 | 603 | 3 | 3 | 100.0000 | |
gduggal-bwafb | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 77.1285 | 64.7059 | 95.4545 | 93.7143 | 33 | 18 | 21 | 1 | 1 | 100.0000 | |
gduggal-bwafb | INDEL | D1_5 | map_l100_m2_e1 | homalt | 98.9468 | 98.5484 | 99.3485 | 85.4812 | 611 | 9 | 610 | 4 | 4 | 100.0000 | |
gduggal-bwafb | INDEL | D1_5 | map_l125_m0_e0 | homalt | 99.3243 | 99.3243 | 99.3243 | 89.8769 | 147 | 1 | 147 | 1 | 1 | 100.0000 | |
gduggal-bwafb | INDEL | D1_5 | map_l125_m1_e0 | homalt | 99.1379 | 98.8539 | 99.4236 | 87.3818 | 345 | 4 | 345 | 2 | 2 | 100.0000 | |
gduggal-bwafb | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.1736 | 98.9011 | 99.4475 | 87.9894 | 360 | 4 | 360 | 2 | 2 | 100.0000 | |
gduggal-bwafb | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.0553 | 98.6559 | 99.4580 | 88.0078 | 367 | 5 | 367 | 2 | 2 | 100.0000 | |
gduggal-bwafb | INDEL | D1_5 | map_l150_m0_e0 | homalt | 98.8235 | 98.8235 | 98.8235 | 92.7039 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
gduggal-bwafb | INDEL | D1_5 | map_l150_m1_e0 | homalt | 98.6784 | 98.2456 | 99.1150 | 89.6092 | 224 | 4 | 224 | 2 | 2 | 100.0000 | |
gduggal-bwafb | INDEL | D1_5 | map_l150_m2_e0 | homalt | 98.5447 | 97.9339 | 99.1632 | 90.1240 | 237 | 5 | 237 | 2 | 2 | 100.0000 | |
gduggal-bwafb | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.5801 | 97.9839 | 99.1837 | 90.0770 | 243 | 5 | 243 | 2 | 2 | 100.0000 | |
gduggal-bwafb | INDEL | D1_5 | map_siren | hetalt | 84.8684 | 75.0000 | 97.7273 | 92.9487 | 63 | 21 | 43 | 1 | 1 | 100.0000 | |
gduggal-bwafb | INDEL | D1_5 | segdup | hetalt | 94.1742 | 94.2308 | 94.1176 | 97.6902 | 49 | 3 | 16 | 1 | 1 | 100.0000 | |
gduggal-bwafb | INDEL | D6_15 | * | hetalt | 90.9853 | 84.6464 | 98.3504 | 52.1249 | 6919 | 1255 | 1252 | 21 | 21 | 100.0000 | |
gduggal-bwafb | INDEL | D6_15 | HG002complexvar | hetalt | 88.4177 | 83.7117 | 93.6842 | 66.0714 | 848 | 165 | 178 | 12 | 12 | 100.0000 | |
gduggal-bwafb | INDEL | D6_15 | HG002compoundhet | hetalt | 91.1254 | 84.6645 | 98.6540 | 40.8708 | 6901 | 1250 | 1246 | 17 | 17 | 100.0000 | |
gduggal-bwafb | INDEL | D6_15 | func_cds | * | 89.1566 | 86.0465 | 92.5000 | 51.8072 | 37 | 6 | 37 | 3 | 3 | 100.0000 | |
gduggal-bwafb | INDEL | D6_15 | func_cds | het | 89.8273 | 89.6552 | 90.0000 | 47.3684 | 26 | 3 | 27 | 3 | 3 | 100.0000 | |
gduggal-bwafb | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 82.4503 | 70.7523 | 98.7826 | 36.8825 | 1674 | 692 | 568 | 7 | 7 | 100.0000 | |
gduggal-bwafb | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 60.0000 | 50.0000 | 75.0000 | 97.9899 | 3 | 3 | 3 | 1 | 1 | 100.0000 | |
gduggal-bwafb | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 98.3871 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
gduggal-bwafb | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 93.1550 | 88.6524 | 98.1395 | 56.7404 | 6039 | 773 | 844 | 16 | 16 | 100.0000 | |
gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 90.8745 | 84.4894 | 98.3036 | 44.9837 | 6809 | 1250 | 1159 | 20 | 20 | 100.0000 | |
gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 76.5957 | 69.2308 | 85.7143 | 83.7209 | 27 | 12 | 6 | 1 | 1 | 100.0000 | |
gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 86.0465 | 86.0465 | 86.0465 | 75.1445 | 37 | 6 | 37 | 6 | 6 | 100.0000 | |
gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 57.1429 | 50.0000 | 66.6667 | 98.4211 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 98.3607 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 83.5360 | 76.8142 | 91.5470 | 43.3092 | 2117 | 639 | 2296 | 212 | 212 | 100.0000 | |
gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 86.0757 | 76.5957 | 98.2337 | 44.2424 | 468 | 143 | 1446 | 26 | 26 | 100.0000 | |
gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 83.1268 | 71.4871 | 99.2941 | 36.3772 | 1221 | 487 | 422 | 3 | 3 | 100.0000 | |
gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 81.6794 | 97.9405 | 70.0491 | 45.2509 | 428 | 9 | 428 | 183 | 183 | 100.0000 | |
gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 91.8646 | 85.7424 | 98.9282 | 41.1728 | 6098 | 1014 | 923 | 10 | 10 | 100.0000 | |
gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 90.9626 | 99.2511 | 83.9517 | 58.3543 | 2783 | 21 | 2783 | 532 | 532 | 100.0000 | |
gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 94.0939 | 89.9412 | 98.6486 | 45.1271 | 4891 | 547 | 511 | 7 | 7 | 100.0000 | |
gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 92.8529 | 99.4937 | 87.0432 | 60.7107 | 2358 | 12 | 2358 | 351 | 351 | 100.0000 | |
gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 91.6751 | 85.4753 | 98.8445 | 42.9599 | 6132 | 1042 | 941 | 11 | 11 | 100.0000 | |
gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 90.8745 | 84.4894 | 98.3036 | 44.9837 | 6809 | 1250 | 1159 | 20 | 20 | 100.0000 | |
gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 93.2232 | 88.4116 | 98.5887 | 45.8515 | 4219 | 553 | 489 | 7 | 7 | 100.0000 | |
gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 73.6947 | 65.2837 | 84.5936 | 37.0238 | 771 | 410 | 895 | 163 | 163 | 100.0000 | |
gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 79.6945 | 66.8919 | 98.5577 | 39.0625 | 99 | 49 | 615 | 9 | 9 | 100.0000 | |
gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 66.5254 | 97.5155 | 50.4823 | 35.8763 | 157 | 4 | 157 | 154 | 154 | 100.0000 |