PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
78651-78700 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | D16_PLUS | HG002compoundhet | hetalt | 80.5942 | 67.5311 | 99.9233 | 34.2251 | 1302 | 626 | 1302 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | HG002compoundhet | homalt | 52.6316 | 62.5000 | 45.4545 | 79.2453 | 5 | 3 | 5 | 6 | 6 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | func_cds | * | 76.1905 | 66.6667 | 88.8889 | 75.6757 | 8 | 4 | 8 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | func_cds | het | 80.0000 | 75.0000 | 85.7143 | 76.6667 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 68.9886 | 52.8205 | 99.4208 | 56.5071 | 515 | 460 | 515 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 92.6089 | 86.4097 | 99.7664 | 61.6487 | 426 | 67 | 427 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 90.0617 | 82.2222 | 99.5536 | 68.6275 | 222 | 48 | 223 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 57.2505 | 41.9890 | 89.9408 | 89.1458 | 152 | 210 | 152 | 17 | 17 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 69.8324 | 53.8020 | 99.4695 | 52.3990 | 375 | 322 | 375 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 90.6103 | 83.5498 | 98.9744 | 59.1195 | 386 | 76 | 386 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 67.6032 | 52.3810 | 95.2970 | 70.8303 | 385 | 350 | 385 | 19 | 19 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 66.1871 | 54.4379 | 84.4037 | 84.9448 | 92 | 77 | 92 | 17 | 17 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 65.8537 | 49.2027 | 99.5392 | 51.5625 | 216 | 223 | 216 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 75.1220 | 60.6299 | 98.7179 | 63.3803 | 77 | 50 | 77 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 79.2661 | 65.8537 | 99.5392 | 53.0303 | 216 | 112 | 216 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 83.3333 | 71.7391 | 99.3976 | 70.7746 | 165 | 65 | 165 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 62.9139 | 46.2662 | 98.2759 | 80.8707 | 285 | 331 | 285 | 5 | 5 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 41.7062 | 26.8293 | 93.6170 | 94.3914 | 44 | 120 | 44 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 67.9174 | 51.7143 | 98.9071 | 58.0275 | 181 | 169 | 181 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m1_e0 | * | 63.5659 | 47.1264 | 97.6190 | 95.5603 | 41 | 46 | 41 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m1_e0 | het | 71.2329 | 56.5217 | 96.2963 | 96.3563 | 26 | 20 | 26 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m2_e0 | * | 62.1212 | 45.5556 | 97.6190 | 95.9184 | 41 | 49 | 41 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m2_e0 | het | 69.3333 | 54.1667 | 96.2963 | 96.6871 | 26 | 22 | 26 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m2_e1 | * | 60.9929 | 44.3299 | 97.7273 | 95.8015 | 43 | 54 | 43 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m2_e1 | het | 70.0000 | 54.9020 | 96.5517 | 96.4976 | 28 | 23 | 28 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_siren | * | 70.5357 | 55.2448 | 97.5309 | 95.0185 | 79 | 64 | 79 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_siren | het | 78.7879 | 66.6667 | 96.2963 | 95.7447 | 52 | 26 | 52 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 73.6842 | 63.6364 | 87.5000 | 99.6924 | 7 | 4 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 50.0000 | 50.0000 | 50.0000 | 99.5960 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 75.0000 | 60.8696 | 97.6744 | 74.5562 | 42 | 27 | 42 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 74.7562 | 62.1622 | 93.7500 | 89.5879 | 46 | 28 | 45 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 74.0849 | 62.1622 | 91.6667 | 93.6508 | 23 | 14 | 22 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 99.2754 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 95.4545 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 38.0952 | 23.6253 | 98.3051 | 64.2424 | 116 | 375 | 116 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 33.7079 | 21.1268 | 83.3333 | 85.3659 | 15 | 56 | 15 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 79.4760 | 66.4234 | 98.9130 | 80.7799 | 273 | 138 | 273 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 94.3828 | 89.4773 | 99.8574 | 56.4904 | 9107 | 1071 | 9104 | 13 | 13 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 87.9523 | 78.9685 | 99.2424 | 47.1530 | 1179 | 314 | 1179 | 9 | 9 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 78.6704 | 65.5385 | 98.3834 | 40.9277 | 426 | 224 | 426 | 7 | 7 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 92.9480 | 87.0130 | 99.7519 | 36.5354 | 402 | 60 | 402 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 85.7143 | 76.0000 | 98.2759 | 73.0233 | 57 | 18 | 57 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 53.8462 | 87.5000 | 93.7500 | 7 | 6 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 73.6842 | 59.5745 | 96.5517 | 96.3151 | 28 | 19 | 28 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 74.3590 | 60.4167 | 96.6667 | 96.4200 | 29 | 19 | 29 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 73.1707 | 58.8235 | 96.7742 | 96.3869 | 30 | 21 | 30 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_siren | hetalt | 75.9124 | 61.9048 | 98.1132 | 96.3423 | 52 | 32 | 52 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 76.3419 | 63.7874 | 95.0495 | 71.2046 | 384 | 218 | 384 | 20 | 20 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 68.8525 | 53.8462 | 95.4545 | 75.5556 | 21 | 18 | 21 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 72.0000 | 62.7907 | 84.3750 | 80.1242 | 27 | 16 | 27 | 5 | 5 | 100.0000 | |