PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
78401-78450 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | D6_15 | func_cds | * | 87.9743 | 83.7209 | 92.6829 | 46.7532 | 36 | 7 | 38 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | func_cds | het | 89.6552 | 89.6552 | 89.6552 | 38.2979 | 26 | 3 | 26 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 59.5745 | 66.6667 | 53.8462 | 93.8095 | 4 | 2 | 7 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 88.8889 | 100.0000 | 80.0000 | 95.3271 | 3 | 0 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 54.5455 | 100.0000 | 37.5000 | 88.8889 | 1 | 0 | 3 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 54.6624 | 38.4615 | 94.4444 | 73.7226 | 15 | 24 | 34 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 47.6190 | 50.0000 | 45.4545 | 94.3878 | 2 | 2 | 5 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 85.7143 | 100.0000 | 75.0000 | 96.0784 | 2 | 0 | 3 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 28.5714 | 89.5522 | 0 | 0 | 2 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 61.5224 | 45.4545 | 95.1613 | 80.3175 | 25 | 30 | 59 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 69.2308 | 54.5455 | 94.7368 | 83.3333 | 18 | 15 | 36 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 50.2734 | 33.9647 | 96.7108 | 42.6363 | 1847 | 3591 | 2117 | 72 | 72 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 52.2084 | 35.8340 | 96.1392 | 47.0737 | 1710 | 3062 | 2017 | 81 | 81 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 55.9476 | 40.5405 | 90.2439 | 86.2416 | 15 | 22 | 37 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 77.8216 | 78.3784 | 77.2727 | 72.3618 | 58 | 16 | 85 | 25 | 25 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 58.8235 | 44.4444 | 86.9565 | 97.3714 | 4 | 5 | 20 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 79.1206 | 94.1309 | 68.2390 | 28.6996 | 417 | 26 | 434 | 202 | 202 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 59.4595 | 45.8333 | 84.6154 | 35.0000 | 11 | 13 | 11 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m0_e0 | homalt | 76.3271 | 79.1667 | 73.6842 | 90.0262 | 19 | 5 | 28 | 10 | 10 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m0_e0 | * | 87.7092 | 85.1064 | 90.4762 | 90.8828 | 40 | 7 | 57 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m0_e0 | het | 95.2276 | 96.5517 | 93.9394 | 90.5714 | 28 | 1 | 31 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m0_e0 | homalt | 81.0811 | 83.3333 | 78.9474 | 93.0909 | 10 | 2 | 15 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m1_e0 | * | 86.6250 | 84.6154 | 88.7324 | 87.5548 | 99 | 18 | 126 | 16 | 16 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m1_e0 | het | 93.2430 | 96.8750 | 89.8734 | 86.2609 | 62 | 2 | 71 | 8 | 8 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m1_e0 | homalt | 82.6646 | 82.3529 | 82.9787 | 89.7826 | 28 | 6 | 39 | 8 | 8 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m2_e0 | het | 92.9271 | 95.7746 | 90.2439 | 86.6667 | 68 | 3 | 74 | 8 | 8 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m2_e1 | het | 92.9271 | 95.7746 | 90.2439 | 86.9634 | 68 | 3 | 74 | 8 | 8 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m0_e0 | * | 90.3114 | 90.6250 | 90.0000 | 92.9577 | 29 | 3 | 36 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m0_e0 | homalt | 83.3333 | 100.0000 | 71.4286 | 93.9130 | 7 | 0 | 10 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m1_e0 | * | 88.5933 | 87.6712 | 89.5349 | 90.3695 | 64 | 9 | 77 | 9 | 9 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m1_e0 | het | 95.4545 | 100.0000 | 91.3043 | 89.6163 | 39 | 0 | 42 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m1_e0 | homalt | 82.2909 | 80.7692 | 83.8710 | 91.6890 | 21 | 5 | 26 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e0 | * | 88.3436 | 87.8049 | 88.8889 | 89.8462 | 72 | 10 | 88 | 11 | 11 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e0 | het | 95.1374 | 97.8261 | 92.5926 | 88.8430 | 45 | 1 | 50 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e0 | homalt | 81.3415 | 82.1429 | 80.5556 | 91.1330 | 23 | 5 | 29 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e1 | * | 88.0187 | 87.0588 | 89.0000 | 89.9598 | 74 | 11 | 89 | 11 | 11 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e1 | het | 95.1593 | 97.8723 | 92.5926 | 89.1129 | 46 | 1 | 50 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e1 | homalt | 81.9113 | 82.7586 | 81.0811 | 91.0412 | 24 | 5 | 30 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m1_e0 | * | 92.1466 | 88.8889 | 95.6522 | 95.5684 | 16 | 2 | 22 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m1_e0 | homalt | 94.1176 | 100.0000 | 88.8889 | 95.9821 | 5 | 0 | 8 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m2_e0 | * | 89.3697 | 86.3636 | 92.5926 | 95.3287 | 19 | 3 | 25 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m2_e0 | het | 96.7742 | 100.0000 | 93.7500 | 94.3662 | 14 | 0 | 15 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m2_e0 | homalt | 86.0215 | 83.3333 | 88.8889 | 96.3563 | 5 | 1 | 8 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m2_e1 | * | 89.3697 | 86.3636 | 92.5926 | 95.4082 | 19 | 3 | 25 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m2_e1 | het | 96.7742 | 100.0000 | 93.7500 | 94.4828 | 14 | 0 | 15 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m2_e1 | homalt | 86.0215 | 83.3333 | 88.8889 | 96.4000 | 5 | 1 | 8 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_siren | hetalt | 41.0050 | 26.2626 | 93.4783 | 86.5103 | 26 | 73 | 43 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | segdup | het | 90.4649 | 88.0435 | 93.0233 | 92.0149 | 81 | 11 | 80 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | * | het | 50.8662 | 38.8889 | 73.5049 | 38.7042 | 1057 | 1661 | 1057 | 381 | 381 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | * | hetalt | 18.8152 | 10.4862 | 91.4634 | 56.9177 | 220 | 1878 | 225 | 21 | 21 | 100.0000 | |