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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
78201-78250 / 86044 show all
gduggal-bwavardINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
11.0979
9.3988
13.5468
44.1924
1111070110702699
99.5726
gduggal-bwavardINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
22.0217
71.6216
13.0112
43.9194
10642105702699
99.5726
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
93.9516
98.5298
89.7799
55.6361
82431238240938934
99.5736
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
49.4454
86.5913
34.6019
50.3848
2835439285553965373
99.5738
eyeh-varpipeINDELI16_PLUSHG002compoundhethomalt
2.4742
66.6667
1.2605
25.1572
213235234
99.5745
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
52.5500
71.5640
41.5188
24.1862
15160117016481641
99.5752
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
51.3899
95.4252
35.1633
52.7695
3692177371568506821
99.5766
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
54.1237
72.0257
43.3492
26.9375
22487127116611654
99.5786
gduggal-bwafbINDELI6_15HG002compoundhethomalt
9.4162
80.6452
5.0000
41.3146
25625475473
99.5789
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
52.1766
96.2264
35.7920
50.1344
3723146371766686640
99.5801
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
20.7663
68.9189
12.2249
46.1133
10246100718715
99.5822
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
10.6794
9.1448
12.8329
47.1191
1081073106720717
99.5833
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
81.3153
78.8474
83.9428
62.4516
25316792525483481
99.5859
gduggal-bwafbINDELI6_15*homalt
93.3335
94.2940
92.3923
40.2909
58833565878484482
99.5868
jpowers-varprowlINDELI16_PLUSHG002compoundhethet
3.5500
25.5319
1.9076
52.7962
123519977973
99.5906
gduggal-snapfbINDELD6_15*homalt
84.4844
84.4926
84.4762
53.3817
53459815322978974
99.5910
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
97.6339
99.5071
95.8298
51.0822
5653285653246245
99.5935
raldana-dualsentieonINDEL*HG002compoundhethomalt
57.9932
99.4169
40.9364
81.2893
6824682984980
99.5935
mlin-fermikitINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
81.4282
87.3673
76.2452
66.4309
823119796248247
99.5968
jpowers-varprowlINDELI16_PLUS*het
66.0542
76.3061
58.2307
60.8634
2074644208014921486
99.5979
jlack-gatkINDELI6_15HG002compoundhethomalt
11.0517
100.0000
5.8491
57.0502
31031499497
99.5992
gduggal-bwafbINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
81.2239
97.0100
69.8565
48.4904
58418584252251
99.6032
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.2945
99.6172
97.0064
59.6494
8328328328257256
99.6109
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.2945
99.6172
97.0064
59.6494
8328328328257256
99.6109
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
90.6827
89.7196
91.6667
60.0255
28803302871261260
99.6169
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
97.4149
99.8046
95.1369
54.7737
5107105106261260
99.6169
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
97.6040
99.7536
95.5451
59.8944
5667145662264263
99.6212
eyeh-varpipeINDELI6_15lowcmp_SimpleRepeat_diTR_11to50homalt
52.1197
61.4379
45.2558
24.9536
9459109713271322
99.6232
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
50.1118
85.0427
35.5215
51.6283
3781665380469056879
99.6235
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
58.4872
85.5667
44.4273
41.2283
5715964574871907163
99.6245
dgrover-gatkINDELI6_15HG002compoundhethomalt
18.7311
100.0000
10.3333
64.1577
31031269268
99.6283
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
94.7163
99.4919
90.3781
51.0003
5091265091542540
99.6310
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_diTR_51to200het
25.7159
56.7347
16.6259
49.0343
27821227213641359
99.6334
ckim-gatkINDELI6_15HG002compoundhethomalt
18.5075
100.0000
10.1974
63.1068
31031273272
99.6337
ghariani-varprowlINDELD16_PLUSHG002compoundhethet
34.2987
89.1358
21.2349
37.1418
3614436813651360
99.6337
ckim-vqsrINDELI6_15HG002compoundhethomalt
18.5075
100.0000
10.1974
63.1068
31031273272
99.6337
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
79.6057
84.7414
75.0569
26.8642
16552981649548546
99.6350
astatham-gatkINDELI6_15HG002compoundhethomalt
18.3976
100.0000
10.1307
62.6829
31031275274
99.6364
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.2063
99.6651
96.7896
65.1548
8332288321276275
99.6377
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.2063
99.6651
96.7896
65.1548
8332288321276275
99.6377
raldana-dualsentieonINDELI1_5*homalt
99.6902
99.8428
99.5381
54.0742
603339560337280279
99.6429
ckim-dragenINDELD1_5HG002compoundhethomalt
66.9786
99.6564
50.4394
90.3836
2901287282281
99.6454
eyeh-varpipeINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
30.5547
21.2500
54.3548
46.8723
102378337283282
99.6466
jpowers-varprowlINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
36.9440
68.9906
25.2262
52.0434
66329866919831976
99.6470
mlin-fermikitINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
75.7234
65.8935
89.0004
54.7661
230111912306285284
99.6491
jpowers-varprowlINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
22.1585
18.8343
26.9076
54.2967
740318973720021995
99.6503
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
79.3723
90.3851
70.7516
51.9765
3497372346414321427
99.6508
ckim-vqsrINDEL*HG002compoundhethomalt
61.0714
99.7085
44.0154
84.7468
6842684870867
99.6552
ckim-gatkINDEL*HG002compoundhethomalt
61.0169
99.7085
43.9589
84.7301
6842684872869
99.6560
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
46.8416
83.8718
32.4948
49.6168
3245624326867896766
99.6612